MzIdentMLDOMHandler Member List

This is the complete list of members for MzIdentMLDOMHandler, including all inherited members.

as_map_	MzIdentMLDOMHandler	private
buildAnalysisCollection_(xmlNode *analysisCollectionElements)	MzIdentMLDOMHandler	protected
buildAnalysisDataCollection_(xmlNode *analysisElements)	MzIdentMLDOMHandler	protected
buildAnalysisProtocolCollection_(xmlNode *protocolElements)	MzIdentMLDOMHandler	protected
buildAnalysisSoftwareList_(xmlNode *analysisSoftwareElements)	MzIdentMLDOMHandler	protected
buildCvList_(xmlNode *cvElements)	MzIdentMLDOMHandler	protected
buildEnclosedCV_(xmlNode *parentElement, const std::string &encel, const std::string &acc, const std::string &name, const std::string &cvref)	MzIdentMLDOMHandler	protected
buildInputDataCollection_(xmlNode *inputElements)	MzIdentMLDOMHandler	protected
buildSequenceCollection_(xmlNode *sequenceCollectionElements)	MzIdentMLDOMHandler	protected
cpep_id_	MzIdentMLDOMHandler	protected
cpro_id_	MzIdentMLDOMHandler	protected
cv_	MzIdentMLDOMHandler	protected
db_map_	MzIdentMLDOMHandler	private
db_sq_map_	MzIdentMLDOMHandler	private
e_score_child_terms_	MzIdentMLDOMHandler	private
findSearchParameters_(std::pair< CVTermList, std::map< std::string, DataValue > > as_params)	MzIdentMLDOMHandler	protectedstatic
getChildWithName_(const std::string &parent_accession, const std::string &name) const	MzIdentMLDOMHandler	protected
hit_pev_	MzIdentMLDOMHandler	private
inferModificationLocation_(xmlNode *modification_element, Size peptide_length) const	MzIdentMLDOMHandler	protected
initScoreTermCaches_()	MzIdentMLDOMHandler	protected
logger_	MzIdentMLDOMHandler	protected
MzIdentMLDOMHandler(const std::vector< ProteinIdentification > &pro_id, const PeptideIdentificationList &pep_id, const std::string &version, const ProgressLogger &logger)	MzIdentMLDOMHandler
MzIdentMLDOMHandler(std::vector< ProteinIdentification > &pro_id, PeptideIdentificationList &pep_id, const std::string &version, const ProgressLogger &logger)	MzIdentMLDOMHandler
MzIdentMLDOMHandler()	MzIdentMLDOMHandler	private
MzIdentMLDOMHandler(const MzIdentMLDOMHandler &rhs)	MzIdentMLDOMHandler	private
operator=(const MzIdentMLDOMHandler &rhs)	MzIdentMLDOMHandler	private
p_pv_map_	MzIdentMLDOMHandler	private
parseAnalysisSoftwareList_(const std::vector< xmlNode * > &analysisSoftwareElements)	MzIdentMLDOMHandler	protected
parseCvParam_(xmlNode *param)	MzIdentMLDOMHandler	protected
parseDBSequenceElements_(const std::vector< xmlNode * > &dbSequenceElements)	MzIdentMLDOMHandler	protected
parseInputElements_(const std::vector< xmlNode * > &inputElements)	MzIdentMLDOMHandler	protected
parseParamGroup_(const std::vector< xmlNode * > &paramGroup)	MzIdentMLDOMHandler	protected
parsePeptideElements_(const std::vector< xmlNode * > &peptideElements)	MzIdentMLDOMHandler	protected
parsePeptideEvidenceElements_(const std::vector< xmlNode * > &peptideEvidenceElements)	MzIdentMLDOMHandler	protected
parsePeptideSiblings_(xmlNode *peptide)	MzIdentMLDOMHandler	protected
parseProteinAmbiguityGroupElement_(xmlNode *proteinAmbiguityGroupElement, ProteinIdentification &protein_identification)	MzIdentMLDOMHandler	protected
parseProteinDetectionHypothesisElement_(xmlNode *proteinDetectionHypothesisElement, ProteinIdentification &protein_identification)	MzIdentMLDOMHandler	protected
parseProteinDetectionListElements_(const std::vector< xmlNode * > &proteinDetectionListElements)	MzIdentMLDOMHandler	protected
parseSpectrumIdentificationElements_(const std::vector< xmlNode * > &spectrumIdentificationElements)	MzIdentMLDOMHandler	protected
parseSpectrumIdentificationItemElement_(xmlNode *spectrumIdentificationItemElement, PeptideIdentification &spectrum_identification, std::string &spectrumIdentificationList_ref)	MzIdentMLDOMHandler	protected
parseSpectrumIdentificationItemSetXLMS(std::set< std::string >::const_iterator set_it, std::multimap< std::string, int > xl_val_map, xmlNode *element_res, const std::string &spectrumID)	MzIdentMLDOMHandler	protected
parseSpectrumIdentificationListElements_(const std::vector< xmlNode * > &spectrumIdentificationListElements)	MzIdentMLDOMHandler	protected
parseSpectrumIdentificationProtocolElements_(const std::vector< xmlNode * > &spectrumIdentificationProtocolElements)	MzIdentMLDOMHandler	protected
parseUserParam_(xmlNode *param)	MzIdentMLDOMHandler	protected
pe_ev_map_	MzIdentMLDOMHandler	private
pep_id_	MzIdentMLDOMHandler	protected
pep_map_	MzIdentMLDOMHandler	private
pro_id_	MzIdentMLDOMHandler	protected
pv_db_map_	MzIdentMLDOMHandler	private
q_score_child_terms_	MzIdentMLDOMHandler	private
readMzIdentMLFile(const std::string &mzid_file)	MzIdentMLDOMHandler
runOfList_(const std::string &spectrum_identification_list_ref)	MzIdentMLDOMHandler	protected
schema_version_	MzIdentMLDOMHandler	protected
sd_map_	MzIdentMLDOMHandler	private
search_engine_	MzIdentMLDOMHandler	private
search_engine_version_	MzIdentMLDOMHandler	private
si_map_	MzIdentMLDOMHandler	private
si_pro_map_	MzIdentMLDOMHandler	private
sp_map_	MzIdentMLDOMHandler	private
specific_score_child_terms_	MzIdentMLDOMHandler	private
sr_map_	MzIdentMLDOMHandler	private
unimod_	MzIdentMLDOMHandler	protected
writeMzIdentMLFile(const std::string &mzid_file)	MzIdentMLDOMHandler
xl_acceptor_pos_map_	MzIdentMLDOMHandler	private
xl_donor_pos_map_	MzIdentMLDOMHandler	private
xl_id_acceptor_map_	MzIdentMLDOMHandler	private
xl_id_donor_map_	MzIdentMLDOMHandler	private
xl_mass_map_	MzIdentMLDOMHandler	private
xl_mod_map_	MzIdentMLDOMHandler	private
xl_ms_search_	MzIdentMLDOMHandler	private
xml_handler_	MzIdentMLDOMHandler	private
~MzIdentMLDOMHandler()	MzIdentMLDOMHandler	virtual