MS1LabeledRatioQuantifier.h File Reference

#include <OpenMS/CHEMISTRY/AASequence.h>
#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/KERNEL/ConsensusMap.h>
#include <OpenMS/METADATA/ExperimentalDesign.h>
#include <OpenMS/METADATA/ProteinIdentification.h>
#include <map>
#include <string>
#include <vector>

Go to the source code of this file.

Classes
class	MS1LabeledRatioQuantifier
	Channel ratios of MS1-labeled (SILAC, Dimethyl, ...) data, aggregated as medians of ratios. More...
struct	MS1LabeledRatioQuantifier::ChannelRatio
	One channel ratio of one peptide or protein group, at (fraction group, channel) grain. More...

Namespaces
namespace	OpenMS
	Main OpenMS namespace.

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Class Documentation

OpenMS::MS1LabeledRatioQuantifier::ChannelRatio

struct OpenMS::MS1LabeledRatioQuantifier::ChannelRatio

One channel ratio of one peptide or protein group, at (fraction group, channel) grain.

Class Members
unsigned	channel = 0	Channel in the numerator (1-based label of the experimental design; the denominator is the reference channel)
Size	count = 0	Number of contributing ratios (evidences for a peptide, peptides for a protein group)
unsigned	fraction_group = 0	Fraction group the ratio was measured in (1-based)
double	normalized_ratio = 0.0	ratio divided by the median peptide ratio of this (fraction group, channel)
double	ratio = 0.0	Median of the contributing ratios.
Size	requantified_count = 0	Of count, the ratios that rest on re-quantified channels: for a peptide, the evidences whose channel or reference channel was re-quantified; for a protein group, the peptide ratios all of whose evidences were
Size	targeted_count = 0	Of count, the ratios that come from targeted quantification (a peptide ratio has either all or none)