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OpenMS
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This is the complete list of members for MultiplexResolverAlgorithm, including all inherited members.
| blacklistOwner(const MSSpectrum &spectrum, Size peak_index) | MultiplexResolverAlgorithm | static |
| check_defaults_ | DefaultParamHandler | protected |
| checkIdentifications(const ConsensusFeature &consensus) const | MultiplexResolverAlgorithm | |
| classifyBlacklistOwner(UInt64 owner, const ConsensusFeature &consensus, const OwnerPeptides &peptides) | MultiplexResolverAlgorithm | static |
| classifyBlacklistOwner(UInt64 owner, const std::string &peptide, const OwnerPeptides &peptides) | MultiplexResolverAlgorithm | static |
| completeConsensus_(const ConsensusFeature &consensus, const std::vector< MultiplexDeltaMasses::DeltaMass > &pattern, const std::vector< bool > &delta_mass_matched, int index_label_set, const MSExperiment &blacklist, const OwnerPeptides *peptides=nullptr, OwnerCheckCounts_ *counts=nullptr) const | MultiplexResolverAlgorithm | protected |
| createGenerator_() const | MultiplexResolverAlgorithm | protected |
| DefaultParamHandler(const std::string &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| DefaultParamHandler() | DefaultParamHandler | private |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| deltaMassFromMapIndex_(const ConsensusFeature::HandleSetType &feature_handles, unsigned idx) | MultiplexResolverAlgorithm | protectedstatic |
| error_name_ | DefaultParamHandler | protected |
| expectedChannelMZs(const AASequence &sequence, int charge, Size &position) const | MultiplexResolverAlgorithm | |
| findMatchingPattern_(const ConsensusFeature &consensus, double detected_delta_mass_at_label_set, const AASequence &sequence, const MultiplexDeltaMasses::LabelSet &label_set, const std::vector< MultiplexDeltaMasses > &theoretical_patterns, const std::vector< std::vector< std::string > > &samples, std::vector< bool > &delta_mass_matched, int &index_label_set) const | MultiplexResolverAlgorithm | protected |
| findNewMZ_(double mz, int charge, const std::vector< MultiplexDeltaMasses::DeltaMass > &pattern, const std::vector< bool > &delta_mass_matched) | MultiplexResolverAlgorithm | protectedstatic |
| getDefaults() const | DefaultParamHandler | |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSubsections() const | DefaultParamHandler | |
| hasBlacklistOwners(const MSExperiment &blacklist) | MultiplexResolverAlgorithm | static |
| isBlacklisted_(const MSExperiment &blacklist, double rt, double mz, size_t charge, const ConsensusFeature &consensus) const | MultiplexResolverAlgorithm | protected |
| isForeign(OwnerRelation relation) | MultiplexResolverAlgorithm | static |
| isReservedByOther_(const MSExperiment &blacklist, double rt, double mz, size_t charge, const ConsensusFeature &consensus, const OwnerPeptides &peptides, OwnerCheckCounts_ &counts) const | MultiplexResolverAlgorithm | protected |
| mass_tolerance_ | MultiplexResolverAlgorithm | protected |
| matchDeltaMasses_(const ConsensusFeature &consensus, double detected_delta_mass_at_label_set, const std::vector< MultiplexDeltaMasses::DeltaMass > &pattern, double theoretical_delta_mass_at_label_set, std::vector< bool > &delta_mass_matched) const | MultiplexResolverAlgorithm | protected |
| matchesResidues_(const std::vector< MultiplexDeltaMasses::DeltaMass > &pattern, const AASequence &sequence, const std::vector< std::vector< std::string > > &samples) | MultiplexResolverAlgorithm | protectedstatic |
| matchLabelSet_(const std::vector< MultiplexDeltaMasses::DeltaMass > &pattern, const MultiplexDeltaMasses::LabelSet &label_set, int &index_label_set) | MultiplexResolverAlgorithm | protectedstatic |
| MultiplexResolverAlgorithm() | MultiplexResolverAlgorithm | |
| mz_tolerance_ | MultiplexResolverAlgorithm | protected |
| operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| OwnerPeptides typedef | MultiplexResolverAlgorithm | |
| ownerPeptides(const ConsensusMap &multiplets) const | MultiplexResolverAlgorithm | |
| OwnerRelation enum name | MultiplexResolverAlgorithm | |
| param_ | DefaultParamHandler | protected |
| peptideKey(const PeptideHit &hit, int charge) const | MultiplexResolverAlgorithm | |
| resolve(const ConsensusMap &map_in, ConsensusMap &map_out, ConsensusMap &map_conflicts, const MSExperiment &blacklist=MSExperiment()) const | MultiplexResolverAlgorithm | |
| rt_tolerance_ | MultiplexResolverAlgorithm | protected |
| setBlacklistOwners(MSSpectrum &spectrum, const std::vector< UInt64 > &owners) | MultiplexResolverAlgorithm | static |
| setName(const std::string &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| subsections_ | DefaultParamHandler | protected |
| updateMembers_() override | MultiplexResolverAlgorithm | protectedvirtual |
| use_blacklist_owners_ | MultiplexResolverAlgorithm | protected |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const std::string &key_prefix="") | DefaultParamHandler | static |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
1.9.8 