|
| class | AcquisitionInfoVisualizer |
| | Class that displays all meta information for AcquisitionInfo objects. More...
|
| |
| class | AcquisitionVisualizer |
| | Class that displays all meta information for Acquisition objects. More...
|
| |
| class | Annotation1DCaret |
| | An annotation item which paints a set of carets on the canvas. More...
|
| |
| class | Annotation1DDistanceItem |
| | An annotation item which represents a measured distance between two peaks. More...
|
| |
| class | Annotation1DItem |
| | An abstract class acting as an interface for the different 1D annotation items. More...
|
| |
| class | Annotation1DPeakItem |
| | A peak annotation item. More...
|
| |
| class | Annotation1DTextItem |
| | An annotation item which represents an arbitrary text on the canvas. More...
|
| |
| class | Annotation1DVerticalLineItem |
| | An annotation item which represents a vertical line (or more precisely a line along the gravity axis, i.e. it could also be horizontal) and text label on top. More...
|
| |
| class | Annotations1DContainer |
| | Container for annotations to content of Plot1DCanvas. More...
|
| |
| class | AxisPainter |
| | Draws a coordinate axis. It has only static methods, that's why the constructor is private. More...
|
| |
| class | AxisTickCalculator |
| | Calculates ticks for a given value range. More...
|
| |
| class | AxisWidget |
| | Widget that represents an axis of a graph. More...
|
| |
| class | BaseVisualizer |
| | A base class for all visualizer classes. More...
|
| |
| class | BaseVisualizerGUI |
| | A base class for all visualizer classes. More...
|
| |
| class | ColorSelector |
| | A widget for selecting a color. More...
|
| |
| class | ContactPersonVisualizer |
| | Class that displays all meta information for ContactPerson objects. More...
|
| |
| class | DataFilterDialog |
| | Dialog for creating and changing a DataFilter. More...
|
| |
| class | DataProcessingVisualizer |
| | Class that displays all meta information for DataProcessing objects. More...
|
| |
| class | DataSelectionTabs |
| | A tabbed view, to browse lists of spectra or identifications. More...
|
| |
| class | DataTabBase |
| | all tabs need to implement this interface More...
|
| |
| class | DIATreeTab |
| | Hierarchical visualization and selection of spectra. More...
|
| |
| class | DimMapper |
| |
| class | DocumentIdentifierVisualizer |
| | Class that displays all meta information for DocumentIdentifier objects. More...
|
| |
| class | EnhancedTabBar |
| | Convenience tab bar implementation. More...
|
| |
| class | EnhancedTabBarWidgetInterface |
| | Widgets that are placed into an EnhancedTabBar must implement this interface. More...
|
| |
| class | EnhancedWorkspace |
| |
| class | ExperimentalSettingsVisualizer |
| | Class that displays all meta information for ExperimentalSettings objects. More...
|
| |
| class | ExternalProcessMBox |
| | A wrapper around ExternalProcess to conveniently show a MessageBox when an error occurs. More...
|
| |
| class | FakeProcess |
| | A FakeProcess class. More...
|
| |
| class | FeatureEditDialog |
| | Dialog for editing a feature. More...
|
| |
| class | FileWatcher |
| | Watcher that monitors file changes. More...
|
| |
| class | GradientVisualizer |
| | GradientVisualizer is a visualizer class for objects of type gradient. More...
|
| |
| class | Gravitator |
| | Manipulates X or Y component of points in the X-Y plane, by assuming one axis (either X or Y axis) has gravity acting upon it. More...
|
| |
| class | GUIProgressLoggerImpl |
| | Implements a GUI version of the ProgressLoggerImpl. More...
|
| |
| class | HistogramDialog |
| | Dialog that show a HistogramWidget. More...
|
| |
| class | HistogramWidget |
| |
| class | HPLCVisualizer |
| | Class that displays all meta information for HPLC objects. More...
|
| |
| class | INIFileEditorWindow |
| | shows the ParamEditor widget in a QMainWindow with a toolbar More...
|
| |
| class | InputFile |
| | A simple widget with a line-edit and a browse button to choose filenames. More...
|
| |
| class | InstrumentSettingsVisualizer |
| | Class that displays all meta information for InstrumentSettings objects. More...
|
| |
| class | InstrumentVisualizer |
| | Class that displays all meta information for an MS instrument. More...
|
| |
| class | InteractiveSplashScreen |
| | A QSplashScreen which stays responsive and can be dismissed early by the user. More...
|
| |
| class | IonDetectorVisualizer |
| | Class that displays all meta information for IonDetector objects. More...
|
| |
| class | IonSourceVisualizer |
| | Class that displays all meta information for IonSource objects. More...
|
| |
| class | IPeptideIds |
| | Abstract base class which defines an interface for PeptideIdentifications. More...
|
| |
| class | LayerAnnotatorAMS |
| |
| class | LayerAnnotatorBase |
| |
| class | LayerAnnotatorOSW |
| |
| class | LayerAnnotatorPeptideID |
| |
| class | LayerData1DBase |
| | Base class for all 1D layers, a special case of LayerData. More...
|
| |
| class | LayerData1DChrom |
| |
| class | LayerData1DIonMobility |
| |
| class | LayerData1DPeak |
| |
| class | LayerDataBase |
| | Class that stores the data for one layer. More...
|
| |
| class | LayerDataChrom |
| | Class that stores the data for one layer of type Chromatogram. More...
|
| |
| class | LayerDataConsensus |
| | Class that stores the data for one layer of type ConsensusMap. More...
|
| |
| struct | LayerDataDefs |
| |
| class | LayerDataFeature |
| | Class that stores the data for one layer of type FeatureMap. More...
|
| |
| class | LayerDataIdent |
| | Class that stores the data for one layer of type PeptideIdentifications. More...
|
| |
| class | LayerDataIonMobility |
| | Class that stores the data for one layer of type IonMobility. More...
|
| |
| class | LayerDataPeak |
| | Class that stores the data for one layer of type PeakMap. More...
|
| |
| class | LayerListView |
| | Pimped QListView for Layers of a Canvas. More...
|
| |
| class | LayerStack |
| |
| class | LayerStatistics |
| | Compute summary statistics (count/min/max/avg) about a container, e.g. intensity, charge, meta values, ... More...
|
| |
| class | LayerStatisticsConsensusMap |
| | Computes statistics and distributions for a PeakMap. More...
|
| |
| class | LayerStatisticsDialog |
| | Dialog showing statistics about the data of the current layer. More...
|
| |
| class | LayerStatisticsFeatureMap |
| | Computes statistics and distributions for a PeakMap. More...
|
| |
| class | LayerStatisticsIdent |
| | Computes statistics and distributions for a vector<PeptideIdentifications> More...
|
| |
| class | LayerStatisticsPeakMap |
| | Computes statistics and distributions for a PeakMap
More...
|
| |
| class | LayerStoreData |
| | Base class to store either the currently visible or all data of a canvas. More...
|
| |
| class | LayerStoreDataConsensusMapAll |
| | Visitor which can save a full ConsensusMap; subsequently the data can be stored to a file. More...
|
| |
| class | LayerStoreDataConsensusMapVisible |
| | Visitor which can save a visible piece of data; subsequently the data can be stored to a file. More...
|
| |
| class | LayerStoreDataFeatureMapAll |
| | Visitor which can save a full FeatureMap; subsequently the data can be stored to a file. More...
|
| |
| class | LayerStoreDataFeatureMapVisible |
| | Visitor which can save a visible piece of data; subsequently the data can be stored to a file. More...
|
| |
| class | LayerStoreDataIdentAll |
| | Visitor which can save a full set of Identifications; subsequently the data can be stored to a file. More...
|
| |
| class | LayerStoreDataIdentVisible |
| | Visitor which can save a visible piece of data; subsequently the data can be stored to a file. More...
|
| |
| class | LayerStoreDataPeakMapAll |
| | Visitor which can save a full experiment; subsequently the data can be stored to a file. More...
|
| |
| class | LayerStoreDataPeakMapVisible |
| | Visitor which can save a visible piece of data; subsequently the data can be stored to a file. More...
|
| |
| class | ListEditor |
| | Editor for editing int, double and string lists (including output and input file lists) More...
|
| |
| class | ListFilterDialog |
| | Dialog for creating and changing a DataFilter. More...
|
| |
| class | LogWindow |
| | A log window (QTextEdit) with convenience functions. More...
|
| |
| class | MassAnalyzerVisualizer |
| | Class that displays all meta information for MassAnalyzer objects. More...
|
| |
| class | MetaDataBrowser |
| | A meta data visualization widget. More...
|
| |
| class | MetaInfoDescriptionVisualizer |
| | Class that displays all meta information for MetaInfoDescription objects. More...
|
| |
| class | MetaInfoVisualizer |
| | MetaInfoVisualizer is a visualizer class for all classes that use one MetaInfo object as member. More...
|
| |
| class | MultiGradient |
| | A gradient of multiple colors and arbitrary distances between colors. More...
|
| |
| class | MultiGradientSelector |
| | A widget witch allows constructing gradients of multiple colors. More...
|
| |
| class | OutputDirectory |
| | A simple widget with a line-edit and a browse button to choose filenames. More...
|
| |
| class | Painter1DBase |
| | A base class for painting all items from a data layer (as supported by class derived from here) onto a 1D Canvas. More...
|
| |
| class | Painter1DChrom |
| | Painter1D for chromatograms. More...
|
| |
| class | Painter1DIonMobility |
| | Painter1D for mobilograms. More...
|
| |
| class | Painter1DPeak |
| | Painter1D for spectra. More...
|
| |
| class | Painter2DBase |
| | A base class for painting all items from a data layer (as supported by class derived from here) onto a 2D Canvas. More...
|
| |
| class | Painter2DChrom |
| | Painter2D for chromatograms. More...
|
| |
| class | Painter2DConsensus |
| | Painter2D for ConsensusFeatures. More...
|
| |
| class | Painter2DFeature |
| | Painter2D for Features. More...
|
| |
| class | Painter2DIdent |
| | Painter2D for Identifications. More...
|
| |
| class | Painter2DIonMobility |
| | Painter2D for ion mobilograms. More...
|
| |
| class | Painter2DPeak |
| | Painter2D for spectra. More...
|
| |
| class | PainterBase |
| | An empty base class with some static convenience functions. More...
|
| |
| class | ParamEditor |
| | A GUI for editing or viewing a Param object. More...
|
| |
| class | PeptideHitVisualizer |
| | Class that displays all meta information for PeptideHit objects. More...
|
| |
| class | PeptideIdentificationVisualizer |
| | Class that displays all meta information for PeptideIdentification objects. More...
|
| |
| class | Plot1DCanvas |
| | Canvas for visualization of one or several spectra. More...
|
| |
| class | Plot1DGoToDialog |
| | simple goto/set visible area dialog for exact placement of the viewing window More...
|
| |
| class | Plot1DWidget |
| | Widget for visualization of several spectra. More...
|
| |
| class | Plot2DCanvas |
| | Canvas for 2D-visualization of peak map, feature map and consensus map data. More...
|
| |
| class | Plot2DGoToDialog |
| | GoTo dialog used to zoom to a m/z and retention time range or to a feature. More...
|
| |
| class | Plot2DWidget |
| | Widget for 2D-visualization of peak map and feature map data. More...
|
| |
| class | Plot3DCanvas |
| | Canvas for 3D-visualization of peak map data. More...
|
| |
| class | Plot3DOpenGLCanvas |
| | OpenGL Canvas for 3D-visualization of map data. More...
|
| |
| class | Plot3DWidget |
| | Widget for 3D-visualization of map data. More...
|
| |
| class | PlotCanvas |
| | Base class for visualization canvas classes. More...
|
| |
| class | PlotWidget |
| | Base class for spectrum widgets. More...
|
| |
| class | PrecursorVisualizer |
| | Class that displays all meta information for Precursor objects. More...
|
| |
| class | ProductVisualizer |
| | Class that displays all meta information for Product objects. More...
|
| |
| class | ProteinHitVisualizer |
| | Class that displays all meta information for ProteinHit objects. More...
|
| |
| class | ProteinIdentificationVisualizer |
| | Class that displays all meta information for ProteinIdentification objects. More...
|
| |
| class | QApplicationTOPP |
| | Extension to the QApplication for running TOPPs GUI tools. More...
|
| |
| struct | RangeStats |
| | Struct representing the statistics about a set of values. More...
|
| |
| struct | RangeStatsType |
| | Origin and name of a statistic. More...
|
| |
| class | RecentFilesMenu |
| | Manages recent files opened by the user and provides a QMenu to go with it. More...
|
| |
| class | SampleVisualizer |
| | Class that displays all meta information of sample objects. More...
|
| |
| class | SaveImageDialog |
| | Dialog for saving an image. More...
|
| |
| class | ScanWindowVisualizer |
| | Class that displays all meta information for ScanWindow objects. More...
|
| |
| class | SignalProvider |
| | provides a signal mechanism (by deriving from QObject) for classes which are not allowed to have signals themselves. More...
|
| |
| class | SoftwareVisualizer |
| | Class that displays all meta information for Software objects. More...
|
| |
| class | SourceFileVisualizer |
| | Class that displays all meta information for SourceFile objects. More...
|
| |
| class | SpectraIDViewTab |
| | Tabular visualization / selection of identified spectra. More...
|
| |
| class | SpectraTreeTab |
| | Hierarchical visualization and selection of spectra. More...
|
| |
| class | SpectrumAlignmentDialog |
| | Lets the user select two spectra and set the parameters for the spectrum alignment. More...
|
| |
| class | SpectrumSettingsVisualizer |
| | Class that displays all meta information for SpectrumSettings objects. More...
|
| |
| struct | StatsCounter |
| | a simple counting struct, for non-numerical occurrences of meta-values More...
|
| |
| class | TableView |
| | A better QTable for TOPPView, which supports exporting to TSV and conveniently adding data to cells and headers. More...
|
| |
| class | TheoreticalSpectrumGenerationDialog |
| | Dialog which allows to enter an AA or NA sequence and generates a theoretical spectrum for it. More...
|
| |
| class | ToolsDialog |
| | TOPP tool selection dialog. More...
|
| |
| class | TOPPASBase |
| | Main window of the TOPPAS tool. More...
|
| |
| class | TOPPASEdge |
| | An edge representing a data flow in TOPPAS. More...
|
| |
| class | TOPPASInputFileDialog |
| | Dialog which allows to specify an input file. More...
|
| |
| class | TOPPASInputFileListVertex |
| | A vertex representing an input file list. More...
|
| |
| class | TOPPASInputFilesDialog |
| | Dialog which allows to specify a list of input files. More...
|
| |
| class | TOPPASIOMappingDialog |
| | Dialog which allows to configure the input/output parameter mapping of an edge. More...
|
| |
| class | TOPPASMergerVertex |
| | A special vertex that allows to merge several inputs. More...
|
| |
| class | TOPPASOutputFileListVertex |
| | A vertex representing an output file list. More...
|
| |
| class | TOPPASOutputFilesDialog |
| | Dialog which allows to specify the directory for the output files. More...
|
| |
| class | TOPPASOutputFolderVertex |
| | A vertex representing an output folder. More...
|
| |
| class | TOPPASOutputVertex |
| | A vertex representing an output, either folder or files(s) More...
|
| |
| class | TOPPASResource |
| | Represents a data resource for TOPPAS workflows. More...
|
| |
| class | TOPPASResources |
| | A dictionary mapping string keys to lists of TOPPASResource objects. More...
|
| |
| class | TOPPASScene |
| |
| class | TOPPASSplitterVertex |
| | A special vertex that allows to split a list of inputs. More...
|
| |
| class | TOPPASToolConfigDialog |
| | TOPP tool configuration dialog. More...
|
| |
| class | TOPPASToolVertex |
| | A vertex representing a TOPP tool. More...
|
| |
| class | TOPPASTreeView |
| | Tree view implementation for the list of TOPP tools. More...
|
| |
| class | TOPPASVertex |
| | The base class of the different vertex classes. More...
|
| |
| class | TOPPASVertexNameDialog |
| | Dialog which allows to change the name of an input/output vertex. More...
|
| |
| class | TOPPASWidget |
| | Widget visualizing and allowing to edit TOPP pipelines. More...
|
| |
| class | TOPPViewBase |
| | Main window of TOPPView tool. More...
|
| |
| class | TOPPViewMenu |
| | The file menu items for TOPPView. More...
|
| |
| class | TOPPViewOpenDialog |
| | Dataset opening options for TOPPView. More...
|
| |
| class | TreeView |
| | A better QTreeWidget for TOPPView, which supports header context menu and conveniently adding/getting headers names. More...
|
| |
| class | TVControllerBase |
| | Base behavior for different visualizaton modules in TOPPView. More...
|
| |
| class | TVDIATreeTabController |
| | Behavior of TOPPView in spectra view mode. More...
|
| |
| class | TVIdentificationViewController |
| | Behavior of TOPPView in identification mode. More...
|
| |
| class | TVSpectraViewController |
| | Behavior of TOPPView in spectra view mode. More...
|
| |
| class | TVToolDiscovery |
| | Scans for tools and generates a param for each asynchronously. More...
|
| |