Here is a list of all variables with links to the classes they belong to:
- o -
- observation_keys_ : OMSFileStore
- observation_lookup_ : IdentificationData
- observation_match_groups_ : IdentificationData
- observation_match_keys_ : OMSFileStore
- observation_match_lookup_ : IdentificationData
- observation_match_refs : IdentificationData::RefTranslator, ObservationMatchGroup
- observation_match_refs_ : OMSFileLoad
- observation_matches_ : IdentificationData
- observation_ref : ObservationMatch
- observation_refs : IdentificationData::RefTranslator
- observation_refs_ : OMSFileLoad
- observations_ : IdentificationData
- observed_ccs_ : SpectralMatch
- OBSERVED_COISOLATED_MZ : ProSEAlgorithm
- observed_intensity_ : AccurateMassSearchResult
- observed_mass : OpenSearchModificationAnalysis::PTMEntry
- OBSERVED_MZ : PSMSchema, QPXFeatureSchema, QPXPSMSchema
- observed_mz_ : AccurateMassSearchResult
- observed_precursor_mass_ : SpectralMatch
- OBSERVED_PRECURSOR_MZ : ProSEAlgorithm
- observed_precursor_rt_ : SpectralMatch
- observed_rt_ : AccurateMassSearchResult
- observed_spectrum_idx_ : SpectralMatch
- observed_spectrum_native_id_ : SpectralMatch
- obsolete : ControlledVocabulary::CVTerm
- occurrence : ProForma::AdductIon, ProForma::UnlocalisedMod
- occurrences : ProSEAlgorithm::ProteinMapping_
- off : NuXLScoringScratch::FirstPassEntry
- offset : ImzMLSpectrumIndex::AuxArray, ImzMLHandler::ArrayMeta, ModifiedSincSmoother::LinearRegression
- offset_ : BinnedSpectrum, LinearInterpolation< Key, Value >
- offset_0_ : BilinearInterpolation< Key, Value >
- offset_1_ : BilinearInterpolation< Key, Value >
- offset_max_ : TransformationModelBSpline
- offset_min_ : TransformationModelBSpline
- offsets_ : FASTAContainer< TFI_File >
- ofs_ : MSDataCachedConsumer, MSDataWritingConsumer, SVOutStream
- ok_ : BSplineSmoothingSpline
- old_score_ : IDScoreSwitcherAlgorithm
- oligo_ref : NucleicAcidSearchEngine::AnnotatedHit
- oligonucleotide_data_ : MzTab
- oligonucleotide_search_engine_score : MzTabMetaData
- oligonucleotides : FileInfo::MzTabInfo
- omssa_id_ : DigestionEnzymeProtein
- one_letter_code_ : Residue
- only_fully_quantified_ : TopDownIsobaricQuantification
- op : Condition, DataFilters::DataFilter
- open_search : ProSEAlgorithm::SharedSearchStats
- open_tag_ : PTMXMLHandler
- open_tags_ : SemanticValidator, XMLHandler
- opened : Param::ParamIterator::TraceInfo
- opt_ : MzTabMSmallMoleculeEvidenceSectionRow, MzTabMSmallMoleculeFeatureSectionRow, MzTabMSmallMoleculeSectionRow, MzTabNucleicAcidSectionRow, MzTabOligonucleotideSectionRow, MzTabOSMSectionRow, MzTabPeptideSectionRow, MzTabProteinSectionRow, MzTabPSMSectionRow, MzTabSmallMoleculeSectionRow
- optimal_threshold : MRMFeatureSelector::SelectorParameters
- optimization_method_ : AbsoluteQuantitation
- optional_ : EnzymeXMLDataProvider< EnzymeType >
- optional_begin : FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern
- optional_end : FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern
- optional_fit_improvement_ : FeatureFinderAlgorithmPicked
- optional_tag : PEFFDisulfideBond, PEFFModification, PEFFProcessedRegion, PEFFVariantComplex, PEFFVariantSimple
- optional_tag_defs : PEFFDatabaseMetadata
- options : ThermoRawScanSelection
- options_ : ConsensusXMLFile, DIAQCMetrics, DTA2DFile, FeatureXMLFile, FileHandler, ImzMLFile, IndexedMzMLFileLoader, ConsensusXMLHandler, FeatureXMLHandler, MzDataHandler, MzMLHandler, MzXMLHandler, MzDataFile, MzMLFile, MzPeakFile, MzXMLFile, OnDiscMSExperiment, TheoreticalGlycanSpectrumGenerator
- order_ : IonDetector, IonSource, MassAnalyzer, SavitzkyGolayFilter
- ordinal : MzPAFAnnotation
- ORDINAL : OSWTransitionSchema
- ordinal : Interpretation
- organism : QPXDatasetExport::Sample
- organism_ : Sample
- organism_depth_ : UniProtXMLHandler
- organism_part : QPXDatasetExport::Sample
- origin_ : ResidueModification, Ribonucleotide
- origin_fullname : IDRipper::RipFileIdentifier
- original : UniProtFeature
- original_charge : RNAPrecursorCorrector::Result
- original_mz : NuXLReportRow, RNAPrecursorCorrector::Result
- original_score_higher_better : IDScoreSwitcherAlgorithm::IDSwitchResult
- original_score_name : IDScoreSwitcherAlgorithm::IDSwitchResult
- original_score_type : IDScoreSwitcherAlgorithm::IDSwitchResult
- original_text : ProForma::MassDelta
- orphan : MultiplexResolverAlgorithm::OwnerCheckCounts_
- os_ : OpenMSOSInfo, XMLValidator
- os_version_ : OpenMSOSInfo
- osm_data_ : MzTab
- osm_search_engine_score : MzTabMetaData
- osms : FileInfo::MzTabInfo
- osw_buffer_bytes : OpenSwathWorkflowScheduler::Options
- oswpq_dir_ : OpenSwathOSWParquetReader
- other_peptide : MultiplexResolverAlgorithm::OwnerCheckCounts_
- out_basename : IDRipper::RipFileIdentifier
- outcome : FragmentIonLikelihoodModel::Ion, SimpleSVM::Prediction
- outcomes_ : FragmentIonLikelihoodModel
- outer_points_ : ConvexHull2D
- outfile_ : FASTAFile, PEFFFile
- outlier_detection_method_ : AbsoluteQuantitation
- output_dir_ : FIAMSScheduler
- output_filename_ : OpenSwathOSWWriter, XTandemInfile
- output_library_ : FeatureFinderIdentificationAlgorithm
- output_lines_ : SequestInfile
- output_results_ : XTandemInfile
- output_views : QPXDatasetExport::ProvenanceStep
- outside_ : LinearInterpolation< Key, Value >
- outside_0_ : BilinearInterpolation< Key, Value >
- outside_1_ : BilinearInterpolation< Key, Value >
- overall_quality_l : MRMFeatureQC::ComponentGroupQCs, MRMFeatureQC::ComponentQCs
- overall_quality_u : MRMFeatureQC::ComponentGroupQCs, MRMFeatureQC::ComponentQCs
- override_group_label_check_ : TransitionTSVFile
- own : ThermoRawFileMetadata::State, MultiplexResolverAlgorithm::OwnerCheckCounts_
- own_streams_ : LogStreamBuf
- owner_ : IDSequencedContainer< Value, Key, KeyMember >::ConstOrderedView
- oxidation : MQExporterHelper::MQCommonOutputs
1.9.8 