Class Hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:

[detail level 1234]

CTOPPViewMenu::ActionRequirement_
►CAnnotation1DItem	An abstract class acting as an interface for the different 1D annotation items
CAnnotation1DCaret< DataPoint >	An annotation item which paints a set of carets on the canvas
CAnnotation1DDistanceItem	An annotation item which represents a measured distance between two peaks
CAnnotation1DPeakItem< DataPoint >	A peak annotation item
CAnnotation1DTextItem	An annotation item which represents an arbitrary text on the canvas
CAnnotation1DVerticalLineItem	An annotation item which represents a vertical line (or more precisely a line along the gravity axis, i.e. it could also be horizontal) and text label on top
CAxisPainter	Draws a coordinate axis. It has only static methods, that's why the constructor is private
CAxisTickCalculator	Calculates ticks for a given value range
CBaseVisualizer< ObjectType >	A base class for all visualizer classes
►CBaseVisualizer< Acquisition >
CAcquisitionVisualizer	Class that displays all meta information for Acquisition objects
►CBaseVisualizer< AcquisitionInfo >
CAcquisitionInfoVisualizer	Class that displays all meta information for AcquisitionInfo objects
►CBaseVisualizer< ContactPerson >
CContactPersonVisualizer	Class that displays all meta information for ContactPerson objects
►CBaseVisualizer< DataProcessing >
CDataProcessingVisualizer	Class that displays all meta information for DataProcessing objects
►CBaseVisualizer< DocumentIdentifier >
CDocumentIdentifierVisualizer	Class that displays all meta information for DocumentIdentifier objects
►CBaseVisualizer< ExperimentalSettings >
CExperimentalSettingsVisualizer	Class that displays all meta information for ExperimentalSettings objects
►CBaseVisualizer< Gradient >
CGradientVisualizer	GradientVisualizer is a visualizer class for objects of type gradient
►CBaseVisualizer< HPLC >
CHPLCVisualizer	Class that displays all meta information for HPLC objects
►CBaseVisualizer< Instrument >
CInstrumentVisualizer	Class that displays all meta information for an MS instrument
►CBaseVisualizer< InstrumentSettings >
CInstrumentSettingsVisualizer	Class that displays all meta information for InstrumentSettings objects
►CBaseVisualizer< IonDetector >
CIonDetectorVisualizer	Class that displays all meta information for IonDetector objects
►CBaseVisualizer< IonSource >
CIonSourceVisualizer	Class that displays all meta information for IonSource objects
►CBaseVisualizer< MassAnalyzer >
CMassAnalyzerVisualizer	Class that displays all meta information for MassAnalyzer objects
►CBaseVisualizer< MetaInfoDescription >
CMetaInfoDescriptionVisualizer	Class that displays all meta information for MetaInfoDescription objects
►CBaseVisualizer< MetaInfoInterface >
CMetaInfoVisualizer	MetaInfoVisualizer is a visualizer class for all classes that use one MetaInfo object as member
►CBaseVisualizer< PeptideHit >
CPeptideHitVisualizer	Class that displays all meta information for PeptideHit objects
►CBaseVisualizer< PeptideIdentification >
CPeptideIdentificationVisualizer	Class that displays all meta information for PeptideIdentification objects
►CBaseVisualizer< Precursor >
CPrecursorVisualizer	Class that displays all meta information for Precursor objects
►CBaseVisualizer< Product >
CProductVisualizer	Class that displays all meta information for Product objects
►CBaseVisualizer< ProteinHit >
CProteinHitVisualizer	Class that displays all meta information for ProteinHit objects
►CBaseVisualizer< ProteinIdentification >
CProteinIdentificationVisualizer	Class that displays all meta information for ProteinIdentification objects
►CBaseVisualizer< Sample >
CSampleVisualizer	Class that displays all meta information of sample objects
►CBaseVisualizer< ScanWindow >
CScanWindowVisualizer	Class that displays all meta information for ScanWindow objects
►CBaseVisualizer< Software >
CSoftwareVisualizer	Class that displays all meta information for Software objects
►CBaseVisualizer< SourceFile >
CSourceFileVisualizer	Class that displays all meta information for SourceFile objects
►CBaseVisualizer< SpectrumSettings >
CSpectrumSettingsVisualizer	Class that displays all meta information for SpectrumSettings objects
CTheoreticalSpectrumGenerationDialog::CheckBox	Struct for all information about a check box of an ion
CColorBrewer
►CDataTabBase	All tabs need to implement this interface
CDIATreeTab	Hierarchical visualization and selection of spectra
CSpectraIDViewTab	Tabular visualization / selection of identified spectra
CSpectraTreeTab	Hierarchical visualization and selection of spectra
►CDefaultParamHandler
►CPlotCanvas	Base class for visualization canvas classes
CPlot1DCanvas	Canvas for visualization of one or several spectra
CPlot2DCanvas	Canvas for 2D-visualization of peak map, feature map and consensus map data
CPlot3DCanvas	Canvas for 3D-visualization of peak map data
CSpectraIDViewTab	Tabular visualization / selection of identified spectra
CTOPPASBase	Main window of the TOPPAS tool
CTOPPViewBase	Main window of TOPPView tool
CDimMapper< D >
CDimMapper< 2 >
CColorBrewer::Distinct
►CEnhancedTabBarWidgetInterface	Widgets that are placed into an EnhancedTabBar must implement this interface
►CPlotWidget	Base class for spectrum widgets
CPlot1DWidget	Widget for visualization of several spectra
CPlot2DWidget	Widget for 2D-visualization of peak map and feature map data
CPlot3DWidget	Widget for 3D-visualization of map data
CTOPPASWidget	Widget visualizing and allowing to edit TOPP pipelines
CExternalProcessMBox	A wrapper around ExternalProcess to conveniently show a MessageBox when an error occurs
CGravitator	Manipulates X or Y component of points in the X-Y plane, by assuming one axis (either X or Y axis) has gravity acting upon it
CGUILock	RAII class to disable the GUI and set a busy cursor and go back to the original state when this class is destroyed
CTOPPASToolVertex::IOInfo	Stores the information for input/output files/lists
►CIPeptideIds	Abstract base class which defines an interface for PeptideIdentifications
CLayerDataFeature	Class that stores the data for one layer of type FeatureMap
CLayerDataIdent	Class that stores the data for one layer of type PeptideIdentifications
►CLayerAnnotatorBase
CLayerAnnotatorAMS
CLayerAnnotatorOSW
CLayerAnnotatorPeptideID
►CLayerDataDefs
►CLayerDataBase	Class that stores the data for one layer
►CLayerData1DBase	Base class for all 1D layers, a special case of LayerData
CLayerData1DChrom
CLayerData1DIonMobility
CLayerData1DPeak
►CLayerDataChrom	Class that stores the data for one layer of type Chromatogram
CLayerData1DChrom
CLayerDataConsensus	Class that stores the data for one layer of type ConsensusMap
CLayerDataFeature	Class that stores the data for one layer of type FeatureMap
CLayerDataIdent	Class that stores the data for one layer of type PeptideIdentifications
►CLayerDataIonMobility	Class that stores the data for one layer of type IonMobility
CLayerData1DIonMobility
►CLayerDataPeak	Class that stores the data for one layer of type PeakMap
CLayerData1DPeak
CLayerStack
►CLayerStatistics	Compute summary statistics (count/min/max/avg) about a container, e.g. intensity, charge, meta values, ..
CLayerStatisticsConsensusMap	Computes statistics and distributions for a PeakMap
CLayerStatisticsFeatureMap	Computes statistics and distributions for a PeakMap
CLayerStatisticsIdent	Computes statistics and distributions for a vector<PeptideIdentifications>
CLayerStatisticsPeakMap	Computes statistics and distributions for a PeakMap
►CLayerStoreData	Base class to store either the currently visible or all data of a canvas
CLayerStoreDataConsensusMapAll	Visitor which can save a full ConsensusMap; subsequently the data can be stored to a file
CLayerStoreDataConsensusMapVisible	Visitor which can save a visible piece of data; subsequently the data can be stored to a file
CLayerStoreDataFeatureMapAll	Visitor which can save a full FeatureMap; subsequently the data can be stored to a file
CLayerStoreDataFeatureMapVisible	Visitor which can save a visible piece of data; subsequently the data can be stored to a file
CLayerStoreDataIdentAll	Visitor which can save a full set of Identifications; subsequently the data can be stored to a file
CLayerStoreDataIdentVisible	Visitor which can save a visible piece of data; subsequently the data can be stored to a file
CLayerStoreDataPeakMapAll	Visitor which can save a full experiment; subsequently the data can be stored to a file
CLayerStoreDataPeakMapVisible	Visitor which can save a visible piece of data; subsequently the data can be stored to a file
►Clist< T >	STL class
CAnnotations1DContainer	Container for annotations to content of Plot1DCanvas
CMultiGradient	A gradient of multiple colors and arbitrary distances between colors
COverlapDetector	A heuristic: Given a set of levels (rows), try to add items at to topmost row which does not overlap an already placed item in this row (according to its x-coordinate)
►CPainterBase	An empty base class with some static convenience functions
►CPainter1DBase	A base class for painting all items from a data layer (as supported by class derived from here) onto a 1D Canvas
CPainter1DChrom	Painter1D for chromatograms
CPainter1DIonMobility	Painter1D for mobilograms
CPainter1DPeak	Painter1D for spectra
►CPainter2DBase	A base class for painting all items from a data layer (as supported by class derived from here) onto a 2D Canvas
CPainter2DChrom	Painter2D for chromatograms
CPainter2DConsensus	Painter2D for ConsensusFeatures
CPainter2DFeature	Painter2D for Features
CPainter2DIdent	Painter2D for Identifications
CPainter2DIonMobility	Painter2D for ion mobilograms
CPainter2DPeak	Painter2D for spectra
►CProgressLoggerImpl
CGUIProgressLoggerImpl	Implements a GUI version of the ProgressLoggerImpl
CLayerDataDefs::ProjectionData	Result of computing a projection on X and Y axis in a 2D Canvas; see LayerDataBase::getProjection()
►CQApplication
CQApplicationTOPP	Extension to the QApplication for running TOPPs GUI tools
►CQDialog
CDataFilterDialog	Dialog for creating and changing a DataFilter
CFeatureEditDialog	Dialog for editing a feature
CHistogramDialog	Dialog that show a HistogramWidget
CPlot1DPrefDialog	Preferences dialog for Plot1DWidget
CPlot2DPrefDialog	Preferences dialog for Plot2DWidget
CPlot3DPrefDialog	Preferences dialog for Plot3DWidget
CTOPPViewPrefDialog	Preferences dialog for TOPPView
CLayerStatisticsDialog	Dialog showing statistics about the data of the current layer
CListEditor	Editor for editing int, double and string lists (including output and input file lists)
CListFilterDialog	Dialog for creating and changing a DataFilter
CMetaDataBrowser	A meta data visualization widget
CPlot1DGoToDialog	Simple goto/set visible area dialog for exact placement of the viewing window
CPlot2DGoToDialog	GoTo dialog used to zoom to a m/z and retention time range or to a feature
CSaveImageDialog	Dialog for saving an image
CSpectrumAlignmentDialog	Lets the user select two spectra and set the parameters for the spectrum alignment
CTOPPASIOMappingDialog	Dialog which allows to configure the input/output parameter mapping of an edge
CTOPPASInputFileDialog	Dialog which allows to specify an input file
CTOPPASInputFilesDialog	Dialog which allows to specify a list of input files
CTOPPASOutputFilesDialog	Dialog which allows to specify the directory for the output files
CTOPPASToolConfigDialog	TOPP tool configuration dialog
CTOPPASVertexNameDialog	Dialog which allows to change the name of an input/output vertex
CTOPPViewOpenDialog	Dataset opening options for TOPPView
CTheoreticalSpectrumGenerationDialog	Dialog which allows to enter an AA or NA sequence and generates a theoretical spectrum for it
CToolsDialog	TOPP tool selection dialog
►CQFileSystemWatcher
CFileWatcher	Watcher that monitors file changes
►CQGraphicsItem
CTOPPASEdge	An edge representing a data flow in TOPPAS
►CTOPPASVertex	The base class of the different vertex classes
CTOPPASInputFileListVertex	A vertex representing an input file list
CTOPPASMergerVertex	A special vertex that allows to merge several inputs
►CTOPPASOutputVertex	A vertex representing an output, either folder or files(s)
CTOPPASOutputFileListVertex	A vertex representing an output file list
CTOPPASOutputFolderVertex	A vertex representing an output folder
CTOPPASSplitterVertex	A special vertex that allows to split a list of inputs
CTOPPASToolVertex	A vertex representing a TOPP tool
►CQGraphicsScene
CTOPPASScene
►CQGraphicsView
CTOPPASWidget	Widget visualizing and allowing to edit TOPP pipelines
►CQItemDelegate
CListEditorDelegate	Internal delegate class
CParamEditorDelegate	Internal delegate class for QTreeWidget
►CQLineEdit
COpenMSLineEdit	Custom QLineEdit which emits a signal when losing focus (such that we can commit its data)
►CQListWidget
CListTable
CLayerListView	Pimped QListView for Layers of a Canvas
►CQMainWindow
CINIFileEditorWindow	Shows the ParamEditor widget in a QMainWindow with a toolbar
CTOPPASBase	Main window of the TOPPAS tool
CTOPPViewBase	Main window of TOPPView tool
►CQMdiArea
CEnhancedWorkspace
►CQObject
CRecentFilesMenu	Manages recent files opened by the user and provides a QMenu to go with it
CSignalProvider	Signal mechanism (by deriving from QObject) for classes which are not allowed to have signals themselves
CTOPPASEdge	An edge representing a data flow in TOPPAS
CTOPPASResource	Represents a data resource for TOPPAS workflows
CTOPPASResources	A dictionary mapping string keys to lists of TOPPASResource objects
CTOPPASVertex	The base class of the different vertex classes
CTOPPViewMenu	The file menu items for TOPPView
►CTVControllerBase	Base behavior for different visualizaton modules in TOPPView
CTVDIATreeTabController	Behavior of TOPPView in spectra view mode
CTVIdentificationViewController	Behavior of TOPPView in identification mode
CTVSpectraViewController	Behavior of TOPPView in spectra view mode
►CQOpenGLFunctions_2_0
CPlot3DOpenGLCanvas	OpenGL Canvas for 3D-visualization of map data
►CQOpenGLWidget
CPlot3DOpenGLCanvas	OpenGL Canvas for 3D-visualization of map data
►CQProcess
CFakeProcess	A FakeProcess class
►CQSplashScreen
CInteractiveSplashScreen	A QSplashScreen which stays responsive and can be dismissed early by the user
►CQTabBar
CEnhancedTabBar	Convenience tab bar implementation
►CQTableWidget
►CTableView	A better QTable for TOPPView, which supports exporting to TSV and conveniently adding data to cells and headers
CSpectraIDViewTab::SelfResizingTableView_
►CQTabWidget
CDataSelectionTabs	A tabbed view, to browse lists of spectra or identifications
►CQTextEdit
CLogWindow	A log window (QTextEdit) with convenience functions
►CQTreeWidget
CParamTree	QTreeWidget that emits a signal whenever a new row is selected
CTOPPASTreeView	Tree view implementation for the list of TOPP tools
CTreeView	A better QTreeWidget for TOPPView, which supports header context menu and conveniently adding/getting headers names
►CQWidget
CAxisWidget	Widget that represents an axis of a graph
►CBaseVisualizerGUI	A base class for all visualizer classes
CAcquisitionInfoVisualizer	Class that displays all meta information for AcquisitionInfo objects
CAcquisitionVisualizer	Class that displays all meta information for Acquisition objects
CContactPersonVisualizer	Class that displays all meta information for ContactPerson objects
CDataProcessingVisualizer	Class that displays all meta information for DataProcessing objects
CDocumentIdentifierVisualizer	Class that displays all meta information for DocumentIdentifier objects
CExperimentalSettingsVisualizer	Class that displays all meta information for ExperimentalSettings objects
CGradientVisualizer	GradientVisualizer is a visualizer class for objects of type gradient
CHPLCVisualizer	Class that displays all meta information for HPLC objects
CInstrumentSettingsVisualizer	Class that displays all meta information for InstrumentSettings objects
CInstrumentVisualizer	Class that displays all meta information for an MS instrument
CIonDetectorVisualizer	Class that displays all meta information for IonDetector objects
CIonSourceVisualizer	Class that displays all meta information for IonSource objects
CMassAnalyzerVisualizer	Class that displays all meta information for MassAnalyzer objects
CMetaInfoDescriptionVisualizer	Class that displays all meta information for MetaInfoDescription objects
CMetaInfoVisualizer	MetaInfoVisualizer is a visualizer class for all classes that use one MetaInfo object as member
CPeptideHitVisualizer	Class that displays all meta information for PeptideHit objects
CPeptideIdentificationVisualizer	Class that displays all meta information for PeptideIdentification objects
CPrecursorVisualizer	Class that displays all meta information for Precursor objects
CProductVisualizer	Class that displays all meta information for Product objects
CProteinHitVisualizer	Class that displays all meta information for ProteinHit objects
CProteinIdentificationVisualizer	Class that displays all meta information for ProteinIdentification objects
CSampleVisualizer	Class that displays all meta information of sample objects
CScanWindowVisualizer	Class that displays all meta information for ScanWindow objects
CSoftwareVisualizer	Class that displays all meta information for Software objects
CSourceFileVisualizer	Class that displays all meta information for SourceFile objects
CSpectrumSettingsVisualizer	Class that displays all meta information for SpectrumSettings objects
CColorSelector	A widget for selecting a color
CDIATreeTab	Hierarchical visualization and selection of spectra
CHistogramWidget
CInputFile	A simple widget with a line-edit and a browse button to choose filenames
CFilterList	A widget which shows a list of DataFilter items
CFilterableList	A widget which shows a list of text items, which can be filtered
CInputFileList	A widget shows a list of input files (i.e. existing files on a mounted drive), which allows adding/removing files and supports drag'n'drop from the window manager
CMultiGradientSelector	A widget witch allows constructing gradients of multiple colors
COutputDirectory	A simple widget with a line-edit and a browse button to choose filenames
CParamEditor	A GUI for editing or viewing a Param object
CPlotCanvas	Base class for visualization canvas classes
CPlotWidget	Base class for spectrum widgets
CSpectraIDViewTab	Tabular visualization / selection of identified spectra
CSpectraTreeTab	Hierarchical visualization and selection of spectra
CRangeStats< VALUE_TYPE >	Struct representing the statistics about a set of values
CRangeStatsType	Origin and name of a statistic
CStatsCounter	Simple counting struct, for non-numerical occurrences of meta-values
CLayerDataDefs::ProjectionData::Summary
CTOPPASVertex::TOPPASFilenames
CTOPPASScene::TOPPProcess	Stores the information for a TOPP process
CTVToolDiscovery	Scans for tools and generates a param for each asynchronously
CTOPPASVertex::VertexRoundPackage	Info for one edge and round, to be passed to next node
CAcquisition
CAcquisition *
CAcquisitionInfo
CAcquisitionInfo *
CContactPerson
CContactPerson *
CDataProcessing
CDataProcessing *
CDocumentIdentifier
CDocumentIdentifier *
CExperimentalSettings
CExperimentalSettings *
CGradient
CGradient *
CHPLC
CHPLC *
CInstrument
CInstrument *
CInstrumentSettings
CInstrumentSettings *
CIonDetector
CIonDetector *
CIonSource
CIonSource *
CMassAnalyzer
CMassAnalyzer *
CMetaInfoDescription
CMetaInfoDescription *
CMetaInfoInterface
CMetaInfoInterface *
CPeptideHit
CPeptideHit *
CPeptideIdentification
CPeptideIdentification *
CPrecursor
CPrecursor *
CProduct
CProduct *
CProteinHit
CProteinHit *
CProteinIdentification
CProteinIdentification *
CSample
CSample *
CScanWindow
CScanWindow *
CSoftware
CSoftware *
CSourceFile
CSourceFile *
CSpectrumSettings
CSpectrumSettings *