#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/DATASTRUCTURES/ListUtils.h>
#include <OpenMS/MATH/STATISTICS/PosteriorErrorProbabilityModel.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/METADATA/IdentifierMSRunMapper.h>
#include <OpenMS/METADATA/PeptideIdentificationList.h>
#include <OpenMS/METADATA/ProteinIdentification.h>
#include <algorithm>
#include <cmath>
#include <map>
#include <set>
#include <string>
#include <utility>
#include <vector>