ProSE.cpp File Reference

#include <OpenMS/ANALYSIS/ID/PROSE/ProSEAlgorithm.h>
#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/CHEMISTRY/EnzymaticDigestion.h>
#include <OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h>
#include <OpenMS/FORMAT/DATAACCESS/MSDataTransformingConsumer.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/PROCESSING/DEISOTOPING/Deisotoper.h>
#include <OpenMS/openms_data_path.h>
#include <OpenMS/CONCEPT/LogStream.h>
#include <OpenMS/DATASTRUCTURES/ListUtils.h>
#include <OpenMS/FORMAT/ControlledVocabulary.h>
#include <OpenMS/FORMAT/FASTAFile.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/FORMAT/FileNameUtils.h>
#include <OpenMS/FORMAT/FileTypes.h>
#include <OpenMS/FORMAT/ModificationDefinitionIO.h>
#include <OpenMS/FORMAT/QPXDatasetExport.h>
#include <OpenMS/FORMAT/QPXFile.h>
#include <OpenMS/FORMAT/ProteinGroupArrowExport.h>
#include <OpenMS/FORMAT/ProteinIdentificationArrowIO.h>
#include <OpenMS/FORMAT/ArrowIOHelpers.h>
#include <OpenMS/METADATA/ProteinIdentification.h>
#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/SYSTEM/File.h>
#include <OpenMS/SYSTEM/SysInfo.h>
#include <OpenMS/SYSTEM/StopWatch.h>
#include <OpenMS/METADATA/PeptideIdentificationList.h>
#include <OpenMS/FORMAT/PercolatorInfile.h>
#include <exception>
#include <algorithm>
#include <fstream>
#include <future>
#include <cmath>
#include <iomanip>
#include <limits>
#include <new>
#include <sstream>
#include <map>
#include <memory>
#include <set>
#include <iterator>
#include <thread>
#include <tuple>
#include <unordered_set>
#include <utility>