TargetedExperimentHelper.h File Reference

#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/CONCEPT/Types.h>
#include <OpenMS/CONCEPT/Exception.h>
#include <OpenMS/CONCEPT/Macros.h>
#include <OpenMS/CHEMISTRY/AASequence.h>
#include <OpenMS/METADATA/CVTerm.h>
#include <OpenMS/METADATA/CVTermList.h>
#include <OpenMS/METADATA/CVTermListInterface.h>
#include <OpenMS/CHEMISTRY/Residue.h>
#include <OpenMS/CONCEPT/HashUtils.h>
#include <functional>

Go to the source code of this file.

Classes
struct	Configuration
struct	CV
struct	Protein
class	RetentionTime
	This class stores a retention time structure that is used in TargetedExperiment (representing a TraML file) More...
class	PeptideCompound
	Base class to represent either a peptide or a compound. More...
class	Compound
	Represents a compound (small molecule) More...
class	Peptide
	Represents a peptide (amino acid sequence) More...
struct	Peptide::Modification
struct	Contact
struct	Publication
struct	Instrument
struct	Prediction
struct	Interpretation
	Product ion interpretation. More...
struct	TraMLProduct
	Represents a product ion. More...
struct	hash< OpenMS::TargetedExperimentHelper::CV >
	Hash function for TargetedExperimentHelper::CV. More...
struct	hash< OpenMS::TargetedExperimentHelper::Protein >
	Hash function for TargetedExperimentHelper::Protein. More...
struct	hash< OpenMS::TargetedExperimentHelper::RetentionTime >
	Hash function for TargetedExperimentHelper::RetentionTime. More...
struct	hash< OpenMS::TargetedExperimentHelper::PeptideCompound >
	Hash function for TargetedExperimentHelper::PeptideCompound. More...
struct	hash< OpenMS::TargetedExperimentHelper::Compound >
	Hash function for TargetedExperimentHelper::Compound. More...
struct	hash< OpenMS::TargetedExperimentHelper::Peptide >
	Hash function for TargetedExperimentHelper::Peptide. More...
struct	hash< OpenMS::TargetedExperimentHelper::Contact >
	Hash function for TargetedExperimentHelper::Contact. More...
struct	hash< OpenMS::TargetedExperimentHelper::Publication >
	Hash function for TargetedExperimentHelper::Publication. More...
struct	hash< OpenMS::TargetedExperimentHelper::Instrument >
	Hash function for TargetedExperimentHelper::Instrument. More...
struct	hash< OpenMS::TargetedExperimentHelper::Prediction >
	Hash function for TargetedExperimentHelper::Prediction. More...
struct	hash< OpenMS::TargetedExperimentHelper::Interpretation >
	Hash function for TargetedExperimentHelper::Interpretation. More...
struct	hash< OpenMS::TargetedExperimentHelper::TraMLProduct >
	Hash function for TargetedExperimentHelper::TraMLProduct. More...

Namespaces
namespace	OpenMS
	Main OpenMS namespace.
namespace	OpenMS::TargetedExperimentHelper
	This class stores helper structures that are used in multiple classes of the TargetedExperiment (e.g. ReactionMonitoringTransition and IncludeExcludeTarget).
namespace	std
	STL namespace.

Functions
OpenMS::AASequence	getAASequence (const Peptide &peptide)
	helper function that converts a Peptide object to a AASequence object
void	setModification (int location, int max_size, const std::string &modification, OpenMS::AASequence &aas)
	helper function that sets a modification on a AASequence object
std::size_t	hashCVTermListInterface (const CVTermListInterface &cvtli) noexcept