Command being timed: "/usr/bin/singularity exec --cleanenv --bind /nfs/research/juan/DIA/singj/opendia/proteobench-astral-entrapment:/nfs/research/juan/DIA/singj/opendia/proteobench-astral-entrapment --bind /tmp/opendia-pb-100k-62496308:/tmp/opendia-pb-100k-62496308 /nfs/research/juan/DIA/singj/opendia/proteobench-astral-entrapment/containers/openms-opendia_percolator-recovery-cb99c9a30988-2d1741629511.sif /opt/OpenMS/bin/OpenDIA -in /nfs/research/juan/DIA/singj/opendia/proteobench-astral-entrapment/raws/DIA-astral-entrapment/LFQ_Astral_DIA_15min_50ng_Human_01.raw /nfs/research/juan/DIA/singj/opendia/proteobench-astral-entrapment/raws/DIA-astral-entrapment/LFQ_Astral_DIA_15min_50ng_Human_02.raw /nfs/research/juan/DIA/singj/opendia/proteobench-astral-entrapment/raws/DIA-astral-entrapment/LFQ_Astral_DIA_15min_50ng_Human_03.raw -tr /nfs/research/juan/DIA/singj/opendia/proteobench-astral-entrapment/fasta/ProteoBenchFASTA_Entrapment_Human_with_contaminants_entrapment_pep_100k_randomly_sampled.fasta -tr_type fasta -workflow:library_mode predicted -workflow:working_format sqlite -workflow:keep_intermediate_files true -workflow:intermediate_dir /nfs/research/juan/DIA/singj/opendia/proteobench-astral-entrapment/experiments/proteobench_astral_entrapment_opendia_100k_xic_v1/full_62496308/intermediates -out_dir /nfs/research/juan/DIA/singj/opendia/proteobench-astral-entrapment/experiments/proteobench_astral_entrapment_opendia_100k_xic_v1/full_62496308/results -debug 0 -threads 32 -PeptideQueryParameters:LibraryPrediction:enzyme no cleavage -PeptideQueryParameters:LibraryPrediction:missed_cleavages 0 -PeptideQueryParameters:LibraryPrediction:min_peptide_length 7 -PeptideQueryParameters:LibraryPrediction:max_peptide_length 35 -PeptideQueryParameters:LibraryPrediction:precursor_charges 1 2 3 4 5 -PeptideQueryParameters:LibraryPrediction:fixed_modifications Carbamidomethyl (C) -PeptideQueryParameters:LibraryPrediction:variable_modifications Oxidation (M) -PeptideQueryParameters:LibraryPrediction:max_variable_modifications 1 -PeptideQueryParameters:LibraryPrediction:clip_nterm_methionine false -PeptideQueryParameters:LibraryPrediction:prediction_batch_size 5000 -PeptideQueryParameters:LibraryPrediction:inference_threads 8 -PeptideQueryParameters:LibraryPrediction:nce 25 -PeptideQueryParameters:LibraryPrediction:instrument_index 4 -PeptideQueryParameters:LibraryPrediction:predict_ccs false -PeptideQueryParameters:AssayGenerator:min_transitions 6 -PeptideQueryParameters:AssayGenerator:max_transitions 6 -PeptideQueryParameters:AssayGenerator:precursor_lower_mz_limit 400 -PeptideQueryParameters:AssayGenerator:precursor_upper_mz_limit 1000 -PeptideQueryParameters:AssayGenerator:product_lower_mz_limit 100 -PeptideQueryParameters:AssayGenerator:product_upper_mz_limit 1800 -PeptideQueryParameters:DecoyGenerator:method pseudo-reverse -PeptideQueryParameters:DecoyGenerator:aim_decoy_fraction 1 -TargetedDataExtraction:enable_ipf false -TargetedDataExtraction:ion_mobility_mode disabled -TargetedDataExtraction:readOptions cacheWorkingInMemory -TargetedDataExtraction:batchSize 0 -TargetedDataExtraction:innerBatchSize -1 -TargetedDataExtraction:maxConcurrentSwaths 1 -TargetedDataExtraction:outer_loop_threads -1 -TargetedDataExtraction:tempDirectory /tmp/opendia-pb-100k-62496308 -TargetedDataExtraction:write_debug_files false -TargetedDataExtraction:Scoring:stop_report_after_feature 5 -TargetedDataExtraction:out_chrom /nfs/research/juan/DIA/singj/opendia/proteobench-astral-entrapment/experiments/proteobench_astral_entrapment_opendia_100k_xic_v1/full_62496308/results/extracted.chrom.xic -TargetedDataExtraction:Calibration:auto_irt:enabled true -TargetedDataExtraction:Calibration:auto_irt:irt_seed 5489 -TargetedDataExtraction:Calibration:auto_irt:irt_bins 100 -TargetedDataExtraction:Calibration:auto_irt:irt_peptides_per_bin 10 -TargetedDataExtraction:Calibration:auto_irt:linear_top_fraction 0.10 -TargetedDataExtraction:Calibration:auto_irt:irt_peptides_per_bin_nonlinear 0 -TargetedDataExtraction:Calibration:linear:outlier_detection iter_residual -TargetedDataExtraction:Calibration:RTNormalization:estimateBestPeptides -TargetedDataExtraction:Calibration:qc:min_rsq 0.95 -TargetedDataExtraction:Calibration:qc:min_coverage 0.60 -TargetedDataExtraction:Calibration:MassIMCorrection:mz_correction_function quadratic_regression_delta_ppm -Rescoring:level ms1ms2 -Rescoring:percolator:subset_max_train 100000 -Rescoring:percolator:num_threads 3 -Inference:peptide:global false -Inference:protein:global false -Inference:gene:global false -Export:results:run true -Export:results:format tsv -Export:results:max_rs_peakgroup_qvalue 0.01 -Export:results:use_peptide_scores false -Export:results:use_protein_scores false -Export:results:use_gene_scores false -Export:results:exclude_decoys true -Export:matrix:precursor false -Export:matrix:peptide false -Export:matrix:protein false -Export:matrix:gene false"
	User time (seconds): 9707.02
	System time (seconds): 402.70
	Percent of CPU this job got: 191%
	Elapsed (wall clock) time (h:mm:ss or m:ss): 1:27:54
	Average shared text size (kbytes): 0
	Average unshared data size (kbytes): 0
	Average stack size (kbytes): 0
	Average total size (kbytes): 0
	Maximum resident set size (kbytes): 37607296
	Average resident set size (kbytes): 0
	Major (requiring I/O) page faults: 1020
	Minor (reclaiming a frame) page faults: 73546531
	Voluntary context switches: 2763788
	Involuntary context switches: 42901
	Swaps: 0
	File system inputs: 141382
	File system outputs: 58998504
	Socket messages sent: 0
	Socket messages received: 0
	Signals delivered: 0
	Page size (bytes): 4096
	Exit status: 0