IdentifierMSRunMapper.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Timo Sachsenberg $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/DATASTRUCTURES/StringUtils.h>
#include <OpenMS/DATASTRUCTURES/TypeAliases.h>
#include <OpenMS/config.h>
 
#include <map>
#include <vector>
 
namespace OpenMS
{
  // Forward declarations
  class ProteinIdentification;
  class PeptideIdentification;
 
  class OPENMS_DLLAPI IdentifierMSRunMapper
  {
  public:
    IdentifierMSRunMapper() = default;
 
    explicit IdentifierMSRunMapper(const std::vector<ProteinIdentification>& prot_ids);
 
    void create(const std::vector<ProteinIdentification>& prot_ids);
 
    std::string getPrimaryMSRunPath(const PeptideIdentification& pepid) const;
 
    void validateMergeIndex(const PeptideIdentification& pep_id, size_t psm_index) const;
 
    bool hasIdentifier(const std::string& identifier) const;
 
    const std::string& getIdentifier(const StringList& ms_run_paths) const;
 
    bool empty() const;
 
    Size size() const;
 
    const StringList& getMSRunPaths(const std::string& identifier) const;
 
    std::vector<std::string> getIdentifiers() const;
 
    bool hasRunPath(const StringList& ms_run_paths) const;
 
    bool tryGetIdentifier(const StringList& ms_run_paths, std::string& identifier) const;
 
  private:
    static const StringList empty_stringlist_; 
    std::map<std::string, StringList> identifier_to_msrunpath_;
    std::map<StringList, std::string> runpath_to_identifier_;
  };
 
} // namespace OpenMS