OpenMS / TOPP documentation

The OpenMS PiPeline (TOPP) Information for TOPP users.

OpenMS library Information for developers (please make sure to read the OpenMS Developer Guide).

All aspects of using OpenMS (installation, workflows, user tutorials etc), can be found on our ReadTheDocs website Only documentation for individual TOPP tools remains here (since this is build directly from the OpenMS source code using Doxygen): TOPP documentation The graphical tools (TOPPView, TOPPAS, INIFileEditor) and the TOPPAS tutorial are documented in OpenMS-TOPP-GUI. Misc: User FAQ ChangeLog

Building instructions: Building OpenMS on GNU/Linux Building OpenMS on macOS Building OpenMS on Windows Building OpenMS Using vcpkg Development: OpenMS Developer Guide Coding Conventions Developer FAQ C++ Guide How To Write Tests Documentation: Developer Python Guide (online) External Code using OpenMS Targeted Quantitation Tutorial - MRM/SRM and SWATH/DIA quantitation workflow Glycan and glycopeptide fragment generation - Glycan and glycopeptide fragment generation