MS1LabelState.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Timo Sachsenberg $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/CHEMISTRY/AASequence.h>
#include <OpenMS/CONCEPT/Types.h>
#include <OpenMS/METADATA/PeptideHit.h>
 
#include <string>
#include <vector>
 
namespace OpenMS
{
  namespace MS1LabelState
  {
    inline const std::string LABELED_SEQUENCE = "MS1Label:labeled_sequence";
    inline const std::string REMOVED_LABELS = "MS1Label:removed_labels";
    inline const std::string CHANNEL = "MS1Label:channel";
 
    OPENMS_DLLAPI const std::vector<std::string>& keys();
 
    struct OPENMS_DLLAPI Keys
    {
      Keys();
      UInt labeled_sequence;
      UInt removed_labels;
      UInt channel;
    };
 
    OPENMS_DLLAPI bool hasMatchedSequence(const PeptideHit& hit);
    OPENMS_DLLAPI bool hasMatchedSequence(const PeptideHit& hit, const Keys& keys);
 
    OPENMS_DLLAPI AASequence matchedSequence(const PeptideHit& hit);
    OPENMS_DLLAPI AASequence matchedSequence(const PeptideHit& hit, const Keys& keys);
 
    OPENMS_DLLAPI PeptideHit withMatchedSequence(const PeptideHit& hit);
  } // namespace MS1LabelState
} // namespace OpenMS