OpenSwathOSWParquetWriter.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Justin Sing $
// $Authors: Justin Sing $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/CONCEPT/Types.h>
#include <OpenMS/DATASTRUCTURES/StringUtils.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OpenSwathLibraryIDNormalizer.h>
#include <OpenMS/KERNEL/FeatureMap.h>
 
namespace OpenSwath
{
  struct LightTargetedExperiment;
}
 
namespace OpenMS
{
 
  class OPENMS_DLLAPI OpenSwathOSWParquetWriter
  {
  public:
    void write(const std::string& output_path,
               const OpenSwath::LightTargetedExperiment& assay_library,
               const FeatureMap& feature_map,
               UInt64 run_id,
               const std::string& input_filename,
               bool enable_uis_scoring) const;
 
    void write(const std::string& output_path,
               const OpenSwath::LightTargetedExperiment& assay_library,
               const FeatureMap& feature_map,
               UInt64 run_id,
               const std::string& input_filename,
               bool enable_uis_scoring,
               const OpenSwathLibraryIDNormalizer::SourceIDMapping* source_ids) const;
 
    void setPreserveExisting(bool preserve);
  private:
    // Mutable so the const write() method may consult this flag.
    mutable bool preserve_existing_ = false;
  };
 
} // namespace OpenMS