ProteinRunReferences.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Timo Sachsenberg $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/config.h>
 
#include <string>
#include <vector>
 
namespace OpenMS
{
  class ConsensusMap;
  class FeatureMap;
  class PeptideIdentification;
  class PeptideIdentificationList;
  class ProteinIdentification;
 
  class OPENMS_DLLAPI ProteinRunReferences
  {
  public:
    static std::string missingRunMessage(const std::string& identifier);
 
    static void check(const std::vector<ProteinIdentification>& runs, const std::string& identifier);
 
    static void check(const std::vector<ProteinIdentification>& runs, const PeptideIdentificationList& peptides);
 
    static void check(const std::vector<ProteinIdentification>& runs, const std::vector<const PeptideIdentification*>& peptides);
 
    static void check(const FeatureMap& map);
 
    static void check(const ConsensusMap& map);
 
    static void checkProteinAccessions(const FeatureMap& map);
 
    static void checkProteinAccessions(const ConsensusMap& map);
  };
} // namespace OpenMS