RNADeisotoper.h

Go to the documentation of this file.

// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
// --------------------------------------------------------------------------
// $Maintainer: Sam Wein $
// $Authors: Sam Wein $
// --------------------------------------------------------------------------
#pragma once
 
#include <OpenMS/ANALYSIS/TOPDOWN/SpectralDeconvolution.h>
#include <OpenMS/KERNEL/MSSpectrum.h>
 
namespace OpenMS
{
  class RNADeisotoper
  {
  public:
    RNADeisotoper(double tolerance_ppm, int max_abs_charge, bool positive,
                  double max_mass = 1000.0, double min_cos = 0.85, double min_snr = 0.25);
    void filter(MSSpectrum& spectrum, int scan_number, bool decharge);
 
  private:
    SpectralDeconvolution detector_;
    bool positive_;
    int max_abs_charge_;
    double min_cos_;
    double min_snr_;
  };
}