RNADirectedDeconvolution.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
// --------------------------------------------------------------------------
// $Maintainer: Sam Wein $
// $Authors: Sam Wein $
// --------------------------------------------------------------------------
#pragma once
#include <OpenMS/ANALYSIS/TOPDOWN/SpectralDeconvolution.h>
 
namespace OpenMS
{
  class RNADirectedDeconvolution : public SpectralDeconvolution
  {
  public:
    void deconvolve(const MSSpectrum& spectrum, int scan_number, const std::vector<std::pair<double, int>>& queries);
 
  private:
    std::vector<Precursor> queries_;
    std::optional<MassRanges> selectCandidateMassRanges_(const CandidateSelectionContext& context,
      const DeconvolvedSpectrum* evidence_groups, const std::vector<Size>& valid) const override;
  };
}