TransitionParquetFile.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Justin Sing $
// $Authors: Justin Sing $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/ANALYSIS/OPENSWATH/OpenSwathLibraryIDNormalizer.h>
 
#include <OpenMS/CONCEPT/Types.h>
#include <OpenMS/DATASTRUCTURES/StringUtils.h>
 
namespace OpenSwath
{
  struct LightTargetedExperiment;
}
 
namespace OpenMS
{
 
  class OPENMS_DLLAPI TransitionParquetFile
  {
  public:
    TransitionParquetFile() = default;
 
    ~TransitionParquetFile() = default;
 
    void convertParquetToTargetedExperiment(
      const std::string& oswpq_dir,
      OpenSwath::LightTargetedExperiment& targeted_exp) const;
 
    void convertParquetToTargetedExperiment(
      const std::string& oswpq_dir,
      OpenSwath::LightTargetedExperiment& targeted_exp,
      OpenSwathLibraryIDNormalizer::SourceIDMapping* source_ids) const;
 
    void convertLightTargetedExperimentToParquet(
      const std::string& oswpq_path,
      const OpenSwath::LightTargetedExperiment& targeted_exp) const;
 
    void convertLightTargetedExperimentToParquet(
      const std::string& oswpq_path,
      const OpenSwath::LightTargetedExperiment& targeted_exp,
      const OpenSwathLibraryIDNormalizer::SourceIDMapping* source_ids) const;
  };
 
} // namespace OpenMS