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EntrapmentEvaluation Member List

This is the complete list of members for EntrapmentEvaluation, including all inherited members.

classify(const PeptideHit &hit, const std::string &entrapment_prefix, const std::string &decoy_string="", bool decoy_is_prefix=true)EntrapmentEvaluationstatic
estimateTERatio(const std::vector< FASTAFile::FASTAEntry > &db, const std::string &entrapment_prefix, const std::string &decoy_string, bool decoy_is_prefix, const std::string &enzyme="Trypsin", Size missed_cleavages=2, Size min_length=7, Size max_length=40)EntrapmentEvaluationstatic
evaluate(const PeptideIdentificationList &pep_ids, double q_threshold, const std::string &entrapment_prefix, double te_ratio, Level level=Level::PSM, const std::string &class_meta_value="", const std::unordered_set< std::string > *target_peptides=nullptr, const PeptidePairs *pairs=nullptr, const std::string &score_meta_value="", const std::string &decoy_string="", bool decoy_is_prefix=true)EntrapmentEvaluationstatic
Kind enum nameEntrapmentEvaluation
Level enum nameEntrapmentEvaluation
pairPeptides(const std::vector< FASTAFile::FASTAEntry > &db, const std::string &entrapment_prefix, const std::string &decoy_string, bool decoy_is_prefix, const std::string &enzyme="Trypsin", Size missed_cleavages=2, Size min_length=7, Size max_length=40, Size *mismatched=nullptr)EntrapmentEvaluationstatic
PeptidePairs typedefEntrapmentEvaluation
qValue(const PeptideIdentification &pep_id, const PeptideHit &hit)EntrapmentEvaluationstatic
targetPeptides(const std::vector< FASTAFile::FASTAEntry > &db, const std::string &entrapment_prefix, const std::string &decoy_string, bool decoy_is_prefix, const std::string &enzyme="Trypsin", Size missed_cleavages=2, Size min_length=7, Size max_length=40)EntrapmentEvaluationstatic