NuXLFDR Member List

This is the complete list of members for NuXLFDR, including all inherited members.

AUTO_FDR	NuXLFDR	static
AUTO_MIN_DECOYS	NuXLFDR	static
calculatePeptideAndXLQValueAndFilterAtPSMLevel(const std::vector< ProteinIdentification > &protein_ids, const PeptideIdentificationList &peptide_ids, PeptideIdentificationList &pep, double peptide_PSM_qvalue_threshold, double peptide_peptide_qvalue_threshold, PeptideIdentificationList &xl_pi, std::vector< double > xl_PSM_qvalue_thresholds, std::vector< double > xl_peptidelevel_qvalue_thresholds, const std::string &out_idxml, int decoy_factor) const	NuXLFDR
calculatePeptideAndXLQValueAtPSMLevel(const PeptideIdentificationList &peptide_ids, PeptideIdentificationList &pep_pi, PeptideIdentificationList &xl_pi) const	NuXLFDR
isShortXL(const PeptideHit &hit)	NuXLFDR	static
mergePeptidesAndXLs(const PeptideIdentificationList &pep_pi, const PeptideIdentificationList &xl_pi, PeptideIdentificationList &peptide_ids) const	NuXLFDR
NuXLFDR(size_t report_top_hits, XLGroups xl_groups=XLGroups::OFF)	NuXLFDR	explicit
QValueAtPSMLevel(PeptideIdentificationList &peptide_ids) const	NuXLFDR
report_top_hits_	NuXLFDR	private
setUpFDR_(FalseDiscoveryRate &fdr) const	NuXLFDR	private
SHORT_XL_MAX_LENGTH	NuXLFDR	static
SHORT_XL_MIN_NA_LENGTH	NuXLFDR	static
splitIntoPeptidesAndXLs(const PeptideIdentificationList &peptide_ids, PeptideIdentificationList &pep_pi, PeptideIdentificationList &xl_pi) const	NuXLFDR
useShortXLGroup(const PeptideIdentificationList &xl_pi, Size &short_decoys) const	NuXLFDR
xl_groups_	NuXLFDR	private
XLGroups enum name	NuXLFDR
xlGroupsFromString(const std::string &s)	NuXLFDR	static