OpenSwathLibraryPreparation Member List

This is the complete list of members for OpenSwathLibraryPreparation, including all inherited members.

ensureUnimodLoaded(const AssayGeneratorParameters &parameters) const	OpenSwathLibraryPreparation
generateDecoys(const std::string &input_file, FileTypes::Type input_type, const std::string &output_file, FileTypes::Type output_type, const DecoyGeneratorParameters &parameters, const Param &reader_parameters=Param()) const	OpenSwathLibraryPreparation
getLogType() const	OpenSwathLibraryPreparation
log_type_	OpenSwathLibraryPreparation	private
normalizeLibraryToPQP(const std::string &input_file, FileTypes::Type input_type, const std::string &output_pqp, const Param &reader_parameters=Param()) const	OpenSwathLibraryPreparation
OpenSwathLibraryPreparation()	OpenSwathLibraryPreparation
prepareAssays(const std::string &input_file, FileTypes::Type input_type, const std::string &output_file, FileTypes::Type output_type, const AssayGeneratorParameters &parameters, const Param &reader_parameters=Param()) const	OpenSwathLibraryPreparation
prepareEmpiricalLibraryToPQP(const std::string &input_file, FileTypes::Type input_type, const std::string &output_pqp, const AssayGeneratorParameters &assay_parameters, const DecoyGeneratorParameters &decoy_parameters, const Param &reader_parameters=Param(), const std::string &scratch_directory="") const	OpenSwathLibraryPreparation
preparePredictedLibraryToPQP(const std::string &input_fasta, const std::string &output_pqp, const AssayGeneratorParameters &assay_parameters, const DecoyGeneratorParameters &decoy_parameters, const PredictedLibraryParameters &prediction_parameters, const std::string &scratch_directory="") const	OpenSwathLibraryPreparation
setLogType(ProgressLogger::LogType log_type)	OpenSwathLibraryPreparation