ConsensusMapNormalizerAlgorithmRTLocal.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Timo Sachsenberg $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/KERNEL/ConsensusMap.h>
 
#include <string>
#include <vector>
 
namespace OpenMS
{
 
  class OPENMS_DLLAPI ConsensusMapNormalizerAlgorithmRTLocal
  {
  public:
    struct Settings
    {
      Size neighbors = 50;     
      Size rounds = 5;         
      Size min_maps = 3;       
      Size min_reference = 20; 
    };
 
    static std::vector<std::vector<double>> computeOffsets(const ConsensusMap& map, const Settings& settings,
                                                           const std::string& acc_filter, const std::string& desc_filter);
 
    static void normalizeMaps(ConsensusMap& map, const Settings& settings, const std::string& acc_filter, const std::string& desc_filter);
  };
 
} // namespace OpenMS