#include <OpenMS/ANALYSIS/ID/EntrapmentEvaluation.h>
#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/CONCEPT/Constants.h>
#include <OpenMS/CONCEPT/LogStream.h>
#include <OpenMS/FORMAT/FASTAFile.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/METADATA/ProteinIdentification.h>
#include <cmath>
#include <filesystem>
#include <fstream>
#include <iomanip>
#include <map>
#include <sstream>
#include <unordered_set>