IDConflictResolverAlgorithm.h File Reference

#include <OpenMS/KERNEL/ConsensusMap.h>
#include <OpenMS/KERNEL/FeatureMap.h>
#include <OpenMS/METADATA/PeptideIdentification.h>
#include <OpenMS/METADATA/PeptideIdentificationList.h>

Go to the source code of this file.

Classes
class	IDConflictResolverAlgorithm
	Resolves ambiguous annotations of features with peptide identifications. More...
struct	IDConflictResolverAlgorithm::UnresolvedIdentifications
	What reduceToOnePerSpectrum() found and did. All counts are over the input list. More...

Namespaces
namespace	OpenMS
	Main OpenMS namespace.

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Class Documentation

OpenMS::IDConflictResolverAlgorithm::UnresolvedIdentifications

struct OpenMS::IDConflictResolverAlgorithm::UnresolvedIdentifications

What reduceToOnePerSpectrum() found and did. All counts are over the input list.

Class Members
string	example	First reduced group, as "<spectrum reference> / <sequence> / charge <n>", for logging.
Size	inconsistent_score_direction = 0	Identifications whose group disagreed on isHigherScoreBetter(), so "best" was undefined. Left untouched rather than reduced by a coin flip.
Size	multiply_identified_spectra = 0	Spectra that still carry more than one identification AFTER the reduction, i.e. ones whose identifications name different peptidoforms (a chimeric spectrum, or search engines that disagree). Not reduced - both are quantifiable - but worth reporting.
Size	removed = 0	Identifications removed because another one claimed the same (spectrum reference, top-hit sequence, top-hit charge).
Size	without_spectrum_reference = 0	Identifications that could not be keyed because they carry no spectrum reference. Left untouched: without a reference there is nothing to tell them apart by.