ImzMLHandler.h File Reference

#include <OpenMS/FORMAT/HANDLERS/MzMLHandler.h>
#include <OpenMS/FORMAT/OPTIONS/PeakFileOptions.h>
#include <OpenMS/FORMAT/HANDLERS/ImzMLHandlerHelper.h>
#include <OpenMS/INTERFACES/IMSDataConsumer.h>
#include <cstdio>
#include <cstdint>
#include <memory>
#include <string>
#include <unordered_map>
#include <vector>

Go to the source code of this file.

Classes
class	ImzMLHandler
	SAX2 handler for imzML 1.1.0 files, extending OpenMS MzMLHandler. More...
struct	ImzMLHandler::ArrayMeta
struct	ImzMLHandler::SpecIMS
struct	ImzMLHandler::CvEntry
	A cvParam captured inside a referenceableParamGroup. More...

Namespaces
namespace	OpenMS
	Main OpenMS namespace.
namespace	OpenMS::Internal
	Namespace used to hide implementation details from users.

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Class Documentation

OpenMS::Internal::ImzMLHandler::SpecIMS

struct OpenMS::Internal::ImzMLHandler::SpecIMS

Class Members
vector< ArrayMeta >	aux_meta	Auxiliary external arrays (ion mobility, SNR, …) in document order.
vector< string >	inline_aux_names	Non-external aux arrays seen while peaks come from the .ibd (warned and dropped).
ArrayMeta	int_meta
ArrayMeta	mz_meta
uint32_t	x {0}
uint32_t	y {0}
uint32_t	z {1}

OpenMS::Internal::ImzMLHandler::CvEntry

struct OpenMS::Internal::ImzMLHandler::CvEntry

A cvParam captured inside a referenceableParamGroup.

Class Members
string	accession
string	name
string	unit_accession
string	value