#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h>
#include <OpenMS/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.h>
#include <OpenMS/ANALYSIS/QUANTITATION/IsobaricIsotopeCorrector.h>
#include <OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantifier.h>
#include <OpenMS/ML/NNLS/NonNegativeLeastSquaresSolver.h>
#include <OpenMS/ANALYSIS/ID/BasicProteinInferenceAlgorithm.h>
#include <OpenMS/ANALYSIS/ID/BayesianProteinInferenceAlgorithm.h>
#include <OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h>
#include <OpenMS/ANALYSIS/ID/IDMergerAlgorithm.h>
#include <OpenMS/ANALYSIS/ID/PrecursorPurity.h>
#include <OpenMS/CHEMISTRY/AASequence.h>
#include <OpenMS/ANALYSIS/QUANTITATION/PeptideAndProteinQuant.h>
#include <OpenMS/FORMAT/ConsensusXMLFile.h>
#include <OpenMS/FORMAT/ExperimentalDesignFile.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/CONCEPT/LogStream.h>
#include <OpenMS/DATASTRUCTURES/ListUtils.h>
#include <OpenMS/METADATA/PeptideIdentificationList.h>
#include <OpenMS/METADATA/ProteinIdentification.h>
#include <OpenMS/KERNEL/ConsensusMap.h>
#include <OpenMS/FORMAT/MzMLFile.h>
#include <OpenMS/FORMAT/MzTabFile.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/ANALYSIS/ID/IDConflictResolverAlgorithm.h>
#include <OpenMS/PROCESSING/ID/IDFilter.h>
#include <string>
#include <vector>
#include <memory>
#include <OpenMS/FORMAT/ConsensusMapArrowExport.h>
#include <OpenMS/FORMAT/ProteinGroupArrowExport.h>
#include <OpenMS/FORMAT/QPXCollectionExport.h>
#include <OpenMS/FORMAT/QPXIdentity.h>
#include <OpenMS/FORMAT/QPXFile.h>