#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h>
#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/ANALYSIS/TARGETED/MRMMapping.h>
#include <OpenMS/DATASTRUCTURES/ListUtils.h>