NuXLSearchIndex.h File Reference

#include <OpenMS/KERNEL/MSSpectrum.h>
#include "NuXLConstants.h"
#include "NuXLFragmentAdductDefinition.h"
#include <algorithm>
#include <cmath>
#include <cstdint>
#include <limits>
#include <map>
#include <numeric>
#include <string>
#include <tuple>
#include <unordered_map>
#include <vector>

Go to the source code of this file.

Classes
struct	NuXLSpectrumIndex
	Search-time lookup structures for the OpenNuXL database search. More...
struct	NuXLFragmentAdductRegistry
struct	NuXLIndexedAdductList
	Fragment adducts of one cross-linked nucleotide with their registry ids and ranks. More...
struct	NuXLPrecursorIndex
	Sorted precursor masses (same order as the multimap they are created from) with a bucket index. More...
struct	NuXLLogFactorialTable
	logfactorial with the exact same summation sequence as the loop it replaces More...
struct	NuXLScoringScratch
	per-thread buffers (no heap allocations per candidate) and memoized match odds More...
struct	NuXLScoringScratch::FirstPassEntry

Namespaces
namespace	OpenMS
	Main OpenMS namespace.

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Class Documentation

OpenMS::NuXLIndexedAdductList

struct OpenMS::NuXLIndexedAdductList

Fragment adducts of one cross-linked nucleotide with their registry ids and ranks.

Class Members
const vector< NuXLFragmentAdductDefinition > *	fas = nullptr
vector< int >	name_ids
char	nucleotide = '?'
vector< int >	ranks

OpenMS::NuXLScoringScratch::FirstPassEntry

struct OpenMS::NuXLScoringScratch::FirstPassEntry

Class Members
uint32_t	cnt[3][2]
double	mass
size_t	off