NuXLSiteLocalization.h File Reference

#include <OpenMS/CHEMISTRY/EnzymaticDigestion.h>
#include <string>
#include <string_view>
#include <vector>

Go to the source code of this file.

Classes
class	NuXLSiteLocalization
	Localizes a cross-link by the chemistry of the cross-linker, within the residues the fragment ions support. More...
struct	NuXLSiteLocalization::Site
	Result of localizing one cross-link. More...
struct	NuXLSiteLocalization::ProteinTermini
	Protein N- and C-terminal peptides of a digest, sorted, to look them up with isProteinNTerminal and isProteinCTerminal. More...

Namespaces
namespace	OpenMS
	Main OpenMS namespace.

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Class Documentation

OpenMS::NuXLSiteLocalization::Site

struct OpenMS::NuXLSiteLocalization::Site

Result of localizing one cross-link.

Class Members
string	method = "unlocalized"	how the site was chosen: "N-term", "K", "STY+H" or "unlocalized"
int	position = -1	localized residue, -1 if unlocalized
int	range_begin = -1	first residue supported by the fragment ions, -1 without fragment evidence
int	range_end = -1	last residue supported by the fragment ions, -1 without fragment evidence

OpenMS::NuXLSiteLocalization::ProteinTermini

struct OpenMS::NuXLSiteLocalization::ProteinTermini

Protein N- and C-terminal peptides of a digest, sorted, to look them up with isProteinNTerminal and isProteinCTerminal.

Class Members
vector< string >	c_terminal	peptides that end a protein
vector< string >	n_terminal	peptides that start a protein (also right behind a clipped initial methionine)