PeptDeepInput.h File Reference

#include <OpenMS/config.h>
#include <OpenMS/CHEMISTRY/AASequence.h>
#include <cstddef>
#include <cstdint>
#include <string>
#include <vector>

Go to the source code of this file.

Classes
struct	PeptDeepInputConfig
	Sequence-padding policy for PeptDeep ONNX inputs. More...
struct	PeptDeepInputBatch
	Flat tensor buffers and dimensions for a PeptDeep ONNX batch. More...
class	PeptDeepInputBuilder
	Shared featurization for PeptDeep RT, CCS, and MS2 ONNX predictors. More...

Namespaces
namespace	OpenMS
	Main OpenMS namespace.
namespace	OpenMS::ML

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Class Documentation

OpenMS::ML::PeptDeepInputConfig

struct OpenMS::ML::PeptDeepInputConfig

Sequence-padding policy for PeptDeep ONNX inputs.

Class Members
bool	add_terminal_tokens = true	Add PeptDeep terminal padding tokens around each peptide.
size_t	fixed_sequence_length = 0	If non-zero, pad every batch to this fixed sequence length. If zero, pad only to the longest encoded peptide in the batch.

OpenMS::ML::PeptDeepInputBatch

struct OpenMS::ML::PeptDeepInputBatch

Flat tensor buffers and dimensions for a PeptDeep ONNX batch.

Class Members
vector< int64_t >	aa_indices
size_t	batch_size = 0
vector< float >	charges
vector< int64_t >	instrument_indices
vector< float >	mod_x
vector< float >	nces
size_t	sequence_length = 0