#include <OpenMS/CONCEPT/Types.h>
#include <OpenMS/CONCEPT/Exception.h>
#include <string>
#include <vector>
#include <array>
#include <string_view>

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Namespaces
namespace	OpenMS
	Main OpenMS namespace.

namespace	OpenMS::ML

Functions
OpenMS::Int64	getAAIndex (char aa)
	Maps amino acid characters to 1-based token indices for PeptDeep models.

void	validatePeptide (const std::string &peptide)
	Validates a peptide sequence for PeptDeep inference. Complex character validation and modification parsing is handled downstream by AASequence.

Variables
constexpr int64_t	PEPTDEEP_MOD_ELEMENTS = 109

constexpr std::array< std::string_view, 109 >	ALPHAPEPTDEEP_MOD_ELEMENTS
	AlphaPeptDeep's exact 109-element array for modification tensor mapping. Elements missing from this list are binned into the final "Other" channel ("?"). Heavy isotopes (2H, 13C, 15N, 18O) map strictly to their dedicated channels.

Namespaces

Functions

Variables