SageAdapter.cpp File Reference

#include <OpenMS/APPLICATIONS/SearchEngineBase.h>
#include <OpenMS/ANALYSIS/ID/PeptideIndexing.h>
#include <OpenMS/ANALYSIS/ID/OpenSearchModificationAnalysis.h>
#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/FORMAT/MzMLFile.h>
#include <OpenMS/FORMAT/PepXMLFile.h>
#include <OpenMS/FORMAT/IdXMLFile.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/FORMAT/ControlledVocabulary.h>
#include <OpenMS/FORMAT/PercolatorInfile.h>
#include <OpenMS/FORMAT/HANDLERS/IndexedMzMLDecoder.h>
#include <OpenMS/FORMAT/DATAACCESS/MSDataWritingConsumer.h>
#include <OpenMS/CHEMISTRY/ModificationsDB.h>
#include <OpenMS/CHEMISTRY/ProteaseDB.h>
#include <OpenMS/CHEMISTRY/ResidueDB.h>
#include <OpenMS/CHEMISTRY/ResidueModification.h>
#include <OpenMS/CHEMISTRY/ModifiedPeptideGenerator.h>
#include <OpenMS/DATASTRUCTURES/ListUtils.h>
#include <OpenMS/PROCESSING/ID/IDFilter.h>
#include <OpenMS/SYSTEM/File.h>
#include <OpenMS/SYSTEM/SystemSettings.h>
#include <OpenMS/SYSTEM/TempFiles.h>
#include <fstream>
#include <regex>
#include <chrono>
#include <map>
#include <vector>
#include <algorithm>
#include <cmath>
#include <numeric>
#include <boost/math/distributions/normal.hpp>