ThermoRawScanReader.h File Reference

#include <OpenMS/FORMAT/ThermoRawFile.h>
#include <OpenMS/FORMAT/HANDLERS/ThermoRawFileMetadata.h>
#include <algorithm>
#include <cmath>
#include <limits>
#include <functional>
#include <memory>
#include <string>
#include <vector>

Go to the source code of this file.

Classes
class	ThermoRawScanReader
	Scan-by-scan conversion of a Thermo RAW file into OpenMS spectra (private). More...
struct	ThermoRawScanReader::ScanInfo
	Scan header values needed to select scans before converting them. More...
struct	ThermoRawScanReader::ScanRecord
	Everything of a scan that depends on the scans before it (see header()). More...
class	ThermoRawScanReader::Accessor
	Converts scans independently of each other (random access). More...
struct	ThermoRawScanSelection
	Scan selection by ThermoRawFile::Options, shared by load(), transform() and OnDiscThermoRawExperiment. More...

Namespaces
namespace	OpenMS
	Main OpenMS namespace.
namespace	OpenMS::Internal
	Initialization procedures.

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Class Documentation

OpenMS::Internal::ThermoRawScanReader::ScanInfo

struct OpenMS::Internal::ThermoRawScanReader::ScanInfo

Scan header values needed to select scans before converting them.

Class Members
int	ms_level = 0	MS level (0 for unknown or non-MS controllers)
double	precursor_mz = 0.0	m/z of the first precursor (NaN if there is none)
double	rt = 0.0	retention time in seconds
int	scan = 0	scan number
double	tic = 0.0	total ion current (NaN if the vendor reports none)

OpenMS::Internal::ThermoRawScanReader::ScanRecord

struct OpenMS::Internal::ThermoRawScanReader::ScanRecord

Everything of a scan that depends on the scans before it (see header()).

With a record, Accessor::convert() converts the scan in any order and on any thread.

Class Members
string	configuration_id	instrument configuration id
ScanInfo	info
string	native_id
vector< ThermoPrecursor >	precursors	resolved in acquisition order