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OpenMS
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Kernel datastructures. More...
Modules | |
| RangeUtils | |
| Predicates for range operations. | |
Classes | |
| class | BaseFeature |
| A basic LC-MS feature. More... | |
| class | ChromatogramPeak |
| A 1-dimensional raw data point or peak for chromatograms. More... | |
| class | ChromatogramRangeManager |
| Range manager for chromatograms. More... | |
| class | ChromatogramTools |
| Conversion class to convert chromatograms. More... | |
| class | ConsensusFeature |
| A consensus feature spanning multiple LC-MS/MS experiments. More... | |
| class | ConsensusMap |
| A container for consensus elements. More... | |
| class | MapConversion |
Static helpers that convert between FeatureMap and ConsensusMap. More... | |
| class | DimRT |
| Dimension implementation for retention time values. More... | |
| class | DimMZ |
| Dimension implementation for m/z values. More... | |
| class | DimINT |
| Dimension implementation for intensity values. More... | |
| class | DimIM |
| Dimension implementation for ion mobility values. More... | |
| class | DimMapper< N_DIM > |
| Allows dynamical switching (at runtime) between a dimension (RT, m/z, int, IM, etc) and X,Y,Z coordinates. You can set either of them, and query the other. The Mapping is stored internally. The unit to which the X,Y,Z coordinates currently mapped onto can also be queried (useful for axis labels etc). More... | |
| class | Feature |
| An LC-MS feature. More... | |
| class | FeatureHandle |
| Representation of a Peak2D, RichPeak2D or Feature . More... | |
| class | FeatureMap |
| A container for features. More... | |
| class | FeatureUniqueIds |
| Checks that every feature of a map has a valid unique id that no other feature of the map shares. More... | |
| class | IMSExperimentRandomAccess |
| Random access to the spectra and chromatograms of an MS run that stays on disk. More... | |
| class | MassTrace |
| A container type that gathers peaks similar in m/z and moving along retention time. More... | |
| class | MobilityPeak1D |
| A 1-dimensional raw data mobility point or peak. The unit (ms, 1/K_0, etc) is implicit. More... | |
| class | MobilityPeak2D |
| A 2-dimensional raw data point or peak. More... | |
| class | Mobilogram |
| The representation of a 1D ion mobilogram. More... | |
| class | MSChromatogram |
| The representation of a chromatogram. More... | |
| class | MSExperiment |
| In-Memory representation of a mass spectrometry run. More... | |
| class | MSSpectrum |
| The representation of a 1D spectrum. More... | |
| class | OnDiscImzMLExperiment |
| Random-access, on-disc reader for imzML mass spectrometry imaging datasets. More... | |
| class | OnDiscMSExperiment |
| Representation of a mass spectrometry experiment on disk. More... | |
| class | Peak1D |
| A 1-dimensional raw data point or peak. More... | |
| class | Peak2D |
| A 2-dimensional raw data point or peak. More... | |
| class | PeakTypeEstimator |
| Estimates if the data of a spectrum is raw data or peak data. More... | |
| class | RichPeak2D |
| A 2-dimensional raw data point or peak with meta information. More... | |
| class | SpectrumRangeManager |
| Advanced range manager for MS spectra with separate ranges for each MS level. More... | |
Typedefs | |
| typedef MSSpectrum | PeakSpectrum |
| Spectrum consisting of raw data points or peaks. | |
| typedef MSExperiment | PeakMap |
| Two-dimensional map of raw data points or peaks. | |
| typedef MSChromatogram | Chromatogram |
| Chromatogram consisting of raw data points or peaks. | |
Functions | |
| template<class DataArrayT > | |
| DataArrayT::iterator | getDataArrayByName (DataArrayT &a, const std::string &name) |
| Helper functions for MSSpectrum and MSChromatogram. | |
Kernel datastructures.
| typedef MSChromatogram Chromatogram |
Chromatogram consisting of raw data points or peaks.
| typedef MSExperiment PeakMap |
Two-dimensional map of raw data points or peaks.
| typedef MSSpectrum PeakSpectrum |
Spectrum consisting of raw data points or peaks.
Meta information includes retention time and MS-level.
| DataArrayT::iterator getDataArrayByName | ( | DataArrayT & | a, |
| const std::string & | name | ||
| ) |
Helper functions for MSSpectrum and MSChromatogram.
Returns an iterator to the first data array with the given name. The end iterator is returned in case no data array with given name exists.
1.9.8 