MQExporterHelper::MQCommonOutputs Struct Reference

#include <QualityControl/include/MQExporterHelper.h>

Public Member Functions
	MQCommonOutputs (const OpenMS::Feature &f, const OpenMS::ConsensusMap &cmap, const OpenMS::Size c_feature_number, const std::multimap< std::string, std::pair< OpenMS::Size, OpenMS::Size > > &UIDs, const OpenMS::ProteinIdentification::Mapping &mp_f, const OpenMS::MSExperiment &exp, const std::map< std::string, std::string > &prot_mapper)

Public Attributes
std::stringstream	modifications
char	acetyl
std::stringstream	oxidation
std::stringstream	gene_names
std::stringstream	protein_names
std::stringstream	msms_mz
std::stringstream	mass_error_ppm
std::stringstream	mass_error_da
std::stringstream	uncalibrated_mass_error_ppm
std::stringstream	uncalibrated_mass_error_da
std::stringstream	uncalibrated_calibrated_mz_ppm
std::stringstream	uncalibrated_calibrated_mz_mda
std::stringstream	base_peak_fraction

Constructor & Destructor Documentation

MQCommonOutputs()

MQCommonOutputs ( const OpenMS::Feature &  f, const OpenMS::ConsensusMap &  cmap, const OpenMS::Size  c_feature_number, const std::multimap< std::string, std::pair< OpenMS::Size, OpenMS::Size > > &  UIDs, const OpenMS::ProteinIdentification::Mapping &  mp_f, const OpenMS::MSExperiment &  exp, const std::map< std::string, std::string > &  prot_mapper  )

explicit

References acetyl, base_peak_fraction, ListUtils::concatenate(), AASequence::empty(), MSExperiment::empty(), MQExporterHelper::extractGeneName(), PeptideHit::extractProteinAccessionsSet(), gene_names, AASequence::getCTerminalModificationName(), ResidueModification::getFullId(), MetaInfoInterface::getMetaValue(), Residue::getModification(), Peak2D::getMZ(), MSExperiment::getNrSpectra(), AASequence::getNTerminalModificationName(), BaseFeature::getPeptideIdentifications(), SpectrumSettings::getPrecursors(), AASequence::getResidue(), PeptideHit::getSequence(), AASequence::hasCTerminalModification(), AASequence::hasNTerminalModification(), MQExporterHelper::hasPeptideIdentifications_(), OpenMS::StringUtils::hasSubstring(), MQExporterHelper::hasValidPepID_(), Residue::isModified(), mass_error_da, mass_error_ppm, MetaInfoInterface::metaValueExists(), modifications, msms_mz, oxidation, OpenMS::Math::ppmToMass(), protein_names, AASequence::size(), uncalibrated_calibrated_mz_mda, uncalibrated_calibrated_mz_ppm, uncalibrated_mass_error_da, and uncalibrated_mass_error_ppm.

Member Data Documentation

acetyl

char acetyl

Referenced by MQCommonOutputs().

base_peak_fraction

std::stringstream base_peak_fraction

Referenced by MQCommonOutputs().

gene_names

std::stringstream gene_names

Referenced by MQCommonOutputs().

mass_error_da

std::stringstream mass_error_da

Referenced by MQCommonOutputs().

mass_error_ppm

std::stringstream mass_error_ppm

Referenced by MQCommonOutputs().

modifications

std::stringstream modifications

Referenced by MQCommonOutputs().

msms_mz

std::stringstream msms_mz

Referenced by MQCommonOutputs().

oxidation

std::stringstream oxidation

Referenced by MQCommonOutputs().

protein_names

std::stringstream protein_names

Referenced by MQCommonOutputs().

uncalibrated_calibrated_mz_mda

std::stringstream uncalibrated_calibrated_mz_mda

Referenced by MQCommonOutputs().

uncalibrated_calibrated_mz_ppm

std::stringstream uncalibrated_calibrated_mz_ppm

Referenced by MQCommonOutputs().

uncalibrated_mass_error_da

std::stringstream uncalibrated_mass_error_da

Referenced by MQCommonOutputs().

uncalibrated_mass_error_ppm

std::stringstream uncalibrated_mass_error_ppm

Referenced by MQCommonOutputs().