EntrapmentEvaluation::Result Struct Reference

result for one class at one q-value threshold and level More...

#include <OpenMS/ANALYSIS/ID/EntrapmentEvaluation.h>

Public Member Functions
double	lowerBoundFDP () const
	lower bound N_E / N (0 if nothing accepted)
double	combinedFDP () const
	combined estimate N_E * (1 + T/E) / N (0 if nothing accepted)
double	pairedFDP () const
	paired estimate (N_E + N_{E>=s>T} + 2 * N_{E>T>=s}) / N (0 if nothing accepted, NaN if not available)

Public Attributes
Size	accepted = 0
	N: accepted non-decoy discoveries (targets + entrapment)
Size	entrapment = 0
	N_E: accepted entrapment-only discoveries.
Size	entrapment_target_not_accepted = 0
	N_{E>=s>T}: accepted entrapment peptides whose paired target is not accepted.
Size	entrapment_above_target = 0
	N_{E>T>=s}: accepted entrapment peptides whose paired target is accepted but does not rank above them.
bool	paired = false
	whether the paired counts are available (peptide level, with peptide pairs)
double	te_ratio = 1.0
	T/E used in the combined estimate.

Detailed Description

result for one class at one q-value threshold and level

Member Function Documentation

combinedFDP()

double combinedFDP

(

)

const

combined estimate N_E * (1 + T/E) / N (0 if nothing accepted)

lowerBoundFDP()

double lowerBoundFDP

(

)

const

lower bound N_E / N (0 if nothing accepted)

pairedFDP()

double pairedFDP

(

)

const

paired estimate (N_E + N_{E>=s>T} + 2 * N_{E>T>=s}) / N (0 if nothing accepted, NaN if not available)

Member Data Documentation

accepted

Size accepted = 0

N: accepted non-decoy discoveries (targets + entrapment)

entrapment

Size entrapment = 0

N_E: accepted entrapment-only discoveries.

entrapment_above_target

Size entrapment_above_target = 0

N_{E>T>=s}: accepted entrapment peptides whose paired target is accepted but does not rank above them.

entrapment_target_not_accepted

Size entrapment_target_not_accepted = 0

N_{E>=s>T}: accepted entrapment peptides whose paired target is not accepted.

paired

bool paired = false

whether the paired counts are available (peptide level, with peptide pairs)

te_ratio

double te_ratio = 1.0

T/E used in the combined estimate.