NuXLReportRow Struct Reference

struct to hold a single report line More...

#include <OpenNuXL/include/NuXLReport.h>

Public Member Functions
std::string	getString (const std::string &separator) const

Public Attributes
bool	no_id
double	rt
double	original_mz
std::string	accessions
std::string	peptide
std::string	NA
Int	charge
double	score
int	rank
double	best_localization_score
std::string	localization_scores
std::string	best_localization
double	peptide_weight
double	NA_weight
double	xl_weight
StringList	meta_values
NuXLMarkerIonExtractor::MarkerIonsType	marker_ions
double	abs_prec_error
double	rel_prec_error
double	m_H
double	m_2H
double	m_3H
double	m_4H
std::string	fragment_annotation

Detailed Description

struct to hold a single report line

Member Function Documentation

getString()

std::string getString

(

const std::string &

separator

)

const

References NuXLReportRow::abs_prec_error, NuXLReportRow::accessions, NuXLReportRow::best_localization, NuXLReportRow::best_localization_score, NuXLReportRow::charge, ListUtils::concatenate(), NuXLReportRow::fragment_annotation, NuXLReportRow::localization_scores, NuXLReportRow::m_2H, NuXLReportRow::m_3H, NuXLReportRow::m_4H, NuXLReportRow::m_H, NuXLReportRow::marker_ions, NuXLReportRow::meta_values, NuXLReportRow::NA, NuXLReportRow::NA_weight, NuXLReportRow::no_id, OpenMS::StringUtils::number(), NuXLReportRow::original_mz, NuXLReportRow::peptide, NuXLReportRow::peptide_weight, NuXLReportRow::rank, NuXLReportRow::rel_prec_error, NuXLReportRow::rt, NuXLReportRow::score, and OpenMS::StringUtils::toStr().

Member Data Documentation

abs_prec_error

double abs_prec_error

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

accessions

std::string accessions

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

best_localization

std::string best_localization

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

best_localization_score

double best_localization_score

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

charge

Int charge

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

fragment_annotation

std::string fragment_annotation

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

localization_scores

std::string localization_scores

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

m_2H

double m_2H

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

m_3H

double m_3H

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

m_4H

double m_4H

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

m_H

double m_H

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

marker_ions

NuXLMarkerIonExtractor::MarkerIonsType marker_ions

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

meta_values

StringList meta_values

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

NA

std::string NA

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

NA_weight

double NA_weight

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

no_id

bool no_id

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

original_mz

double original_mz

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

peptide

std::string peptide

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

peptide_weight

double peptide_weight

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

rank

int rank

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

rel_prec_error

double rel_prec_error

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

rt

double rt

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

score

double score

Referenced by NuXLReport::annotate(), and NuXLReportRow::getString().

xl_weight

double xl_weight

Referenced by NuXLReport::annotate().