PercolatorReset::Input Struct Reference

Rows: one per PSM (all hits of all spectra), in any order. More...

#include <OpenMS/ANALYSIS/ID/PercolatorReset.h>

Public Member Functions
Size	rowCount () const
	Number of rows: of features, or else of the dense feature_matrix.
const double *	row (Size i) const
	Row i: of features, or else of the dense feature_matrix.

Public Attributes
std::vector< std::vector< double > >	features
	feature rows (all of the same length); empty if the rows are in the dense feature_matrix
std::vector< double >	feature_matrix
std::vector< std::string >	feature_names
	one name per feature column
std::vector< bool >	is_decoy
	per row
std::vector< double >	search_scores
	per row: search engine score, higher = better
std::vector< Size >	spectrum
	per row: spectrum (competition unit) of the PSM
std::vector< std::string >	stems
std::vector< char >	decoy_set

Detailed Description

Rows: one per PSM (all hits of all spectra), in any order.

Member Function Documentation

row()

const double * row ( Size  i ) const

inline

Row i: of features, or else of the dense feature_matrix.

rowCount()

Size rowCount ( ) const

inline

Number of rows: of features, or else of the dense feature_matrix.

Member Data Documentation

decoy_set

std::vector<char> decoy_set

per row (Options::decoy_databases = 2 only, else may be empty): 1 or 2 = the decoy database of a decoy row, 3 = a decoy sequence of both databases (shared; then that hypothesis has fewer than two distinct decoys), 0 for targets

feature_matrix

std::vector<double> feature_matrix

the rows, dense (row-major, feature_names.size() values per row; is_decoy.size() rows), if features is empty (Percolator::rescorePSMs() moves RescoreInput::feature_matrix here: no copy per row)

feature_names

std::vector<std::string> feature_names

one name per feature column

features

std::vector<std::vector<double> > features

feature rows (all of the same length); empty if the rows are in the dense feature_matrix

is_decoy

std::vector<bool> is_decoy

per row

search_scores

std::vector<double> search_scores

per row: search engine score, higher = better

spectrum

std::vector<Size> spectrum

per row: spectrum (competition unit) of the PSM

stems

std::vector<std::string> stems

per row: unmodified peptide sequence