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IsoformScopedTracker Struct Reference

#include <UniPEFF/include/UniPEFFEntries.h>

Public Member Functions

void add (size_t applied_in_entry, size_t skipped_in_entry)
 

Public Attributes

size_t applied {0}
 
size_t applied_entries {0}
 
size_t skipped {0}
 
size_t skipped_entries {0}
 

Detailed Description

Counts, over all entries, features that would become annotations of isoform entries: those written (applied) and those left out (skipped). Used for the isoform-scoped features (skipped: the isoform is not written: external, not described, not reconstructable, or -omit_isoforms) and for the canonical features mapped onto isoform entries (unless -omit_canonical_features; skipped: in or across a splice variant, unknown position, or contradicted by the isoform's own annotation).

Member Function Documentation

◆ add()

void add ( size_t  applied_in_entry,
size_t  skipped_in_entry 
)
inline

Member Data Documentation

◆ applied

size_t applied {0}

◆ applied_entries

size_t applied_entries {0}

◆ skipped

size_t skipped {0}

◆ skipped_entries

size_t skipped_entries {0}