#include "MS1LabeledFAIMS.h"
#include "MS1LabeledRatioQuantifier.h"
#include "MS1LabeledSpectra.h"
#include <OpenMS/ANALYSIS/ID/BasicProteinInferenceAlgorithm.h>
#include <OpenMS/ANALYSIS/ID/BayesianProteinInferenceAlgorithm.h>
#include <OpenMS/ANALYSIS/ID/ConsensusMapMergerAlgorithm.h>
#include <OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h>
#include <OpenMS/ANALYSIS/ID/IDConflictResolverAlgorithm.h>
#include <OpenMS/ANALYSIS/ID/IDMapper.h>
#include <OpenMS/ANALYSIS/ID/IDScoreSwitcherAlgorithm.h>
#include <OpenMS/ANALYSIS/ID/PeptideIndexing.h>
#include <OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmQT.h>
#include <OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmIdentification.h>
#include <OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentTransformer.h>
#include <OpenMS/ANALYSIS/MAPMATCHING/TransformationDescription.h>
#include <OpenMS/ANALYSIS/QUANTITATION/DDAWorkflowCommons.h>
#include <OpenMS/ANALYSIS/QUANTITATION/PeptideAndProteinQuant.h>
#include <OpenMS/APPLICATIONS/MapAlignerBase.h>
#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/CHEMISTRY/AASequence.h>
#include <OpenMS/CHEMISTRY/Residue.h>
#include <OpenMS/CHEMISTRY/ResidueModification.h>
#include <OpenMS/CONCEPT/Constants.h>
#include <OpenMS/CONCEPT/LogStream.h>
#include <OpenMS/DATASTRUCTURES/FASTAContainer.h>
#include <OpenMS/DATASTRUCTURES/ListUtils.h>
#include <OpenMS/FEATUREFINDER/FeatureFinderMultiplexAlgorithm.h>
#include <OpenMS/FEATUREFINDER/MultiplexDeltaMassesGenerator.h>
#include <OpenMS/FEATUREFINDER/MultiplexResolverAlgorithm.h>
#include <OpenMS/FORMAT/ArrowIOHelpers.h>
#include <OpenMS/FORMAT/ConsensusMapArrowExport.h>
#include <OpenMS/FORMAT/ExperimentalDesignFile.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/FORMAT/MzTabFile.h>
#include <OpenMS/FORMAT/ProteinGroupArrowExport.h>
#include <OpenMS/FORMAT/QPXCollectionExport.h>
#include <OpenMS/FORMAT/QPXFile.h>
#include <OpenMS/FORMAT/QPXIdentity.h>
#include <OpenMS/FORMAT/TextFile.h>
#include <OpenMS/IONMOBILITY/IMDataConverter.h>
#include <OpenMS/IONMOBILITY/IMTypes.h>
#include <OpenMS/KERNEL/ConsensusMap.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/METADATA/ExperimentalDesign.h>
#include <OpenMS/METADATA/MS1LabelState.h>
#include <OpenMS/METADATA/PeptideIdentificationList.h>
#include <OpenMS/METADATA/ProteinIdentification.h>
#include <OpenMS/PROCESSING/ID/IDFilter.h>
#include <OpenMS/SYSTEM/File.h>
#include <algorithm>
#include <cmath>
#include <limits>
#include <map>
#include <set>
#include <string>
#include <tuple>
#include <vector>