#include <OpenMS/ANALYSIS/OPENSWATH/CalibrationWorkflow.h>
#include <OpenMS/ANALYSIS/OPENSWATH/LevelContextInference.h>
#include <OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OpenSwathExportConfig.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OpenSwathLibraryPreparation.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OpenSwathMatrixExporter.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OpenSwathOSWParquetWriter.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OpenSwathOSWWriter.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OpenSwathParquetExporter.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OpenSwathPeptidoformInference.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OpenSwathPercolatorScoring.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OpenSwathResultsExporter.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OpenSwathWorkflow.h>
#include <OpenMS/ANALYSIS/OPENSWATH/SwathMapMassCorrection.h>
#include <OpenMS/ANALYSIS/OPENSWATH/TransitionListEvidenceFilter.h>
#include <OpenMS/ANALYSIS/OPENSWATH/TransitionPQPFile.h>
#include <OpenMS/ANALYSIS/TARGETED/MRMMapping.h>
#include <OpenMS/APPLICATIONS/OpenSwathBase.h>
#include <OpenMS/CHEMISTRY/AASequence.h>
#include <OpenMS/CHEMISTRY/ProteaseDB.h>
#include <OpenMS/CONCEPT/LogStream.h>
#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/CONCEPT/UniqueIdGenerator.h>
#include <OpenMS/DATASTRUCTURES/ListUtils.h>
#include <OpenMS/DATASTRUCTURES/StringUtils.h>
#include <OpenMS/FORMAT/DATAACCESS/MSChromatogramParquetConsumer.h>
#include <OpenMS/FORMAT/DATAACCESS/MobilogramParquetConsumer.h>
#include <OpenMS/FORMAT/OSWFile.h>
#include <OpenMS/FORMAT/OSWParquetFile.h>
#include <OpenMS/PROCESSING/RESAMPLING/LinearResamplerAlign.h>
#include <OpenMS/SYSTEM/File.h>
#include <OpenMS/SYSTEM/PathUtils.h>
#include <OpenMS/SYSTEM/TempFiles.h>
#include <algorithm>
#include <array>
#include <cmath>
#include <filesystem>
#include <iterator>
#include <limits>
#include <map>
#include <memory>
#include <optional>
#include <set>
#include <unordered_map>
#include <unordered_set>
#include <vector>