PeptDeepRescoring.h File Reference

#include <OpenMS/config.h>
#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/DATASTRUCTURES/ListUtils.h>
#include <OpenMS/KERNEL/StandardTypes.h>
#include <map>
#include <string>
#include <vector>

Go to the source code of this file.

Classes
class	PeptDeepRescoring
	Annotates PSMs with rescoring features derived from PeptDeep predictions. More...
struct	PeptDeepRescoring::Row
	Row of the flat PSM work list built by annotate(). More...
struct	PeptDeepRescoring::PSMRows

Namespaces
namespace	OpenMS
	Main OpenMS namespace.

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Class Documentation

OpenMS::PeptDeepRescoring::Row

struct OpenMS::PeptDeepRescoring::Row

Row of the flat PSM work list built by annotate().

Class Members
bool	calibration_candidate	best hit of its spectrum and not a decoy
Size	hit	index into that identification's hits
Size	key	index into the de-duplicated (sequence, charge) list
Size	len	peptide length
Size	pi	index into the PeptideIdentificationList
double	score	search score, used to pick the calibration set

OpenMS::PeptDeepRescoring::PSMRows

struct OpenMS::PeptDeepRescoring::PSMRows

The PSMs of annotate() and selectNCE(): a row per hit with a sequence, the distinct (sequence, charge) pairs to predict, and the rows of each run (by run identifier, in a stable order)

Class Members
vector< Row >	rows
map< string, vector< Size > >	rows_by_run
vector< float >	uniq_charge
vector< string >	uniq_seq